Jatropha Genome Database

JcCA0297121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297121.10 - phase: 0 /partial
         (175 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44130.1 | Symbols:  | kelch repeat-containing F-box family p...   155   2e-38
AT3G59940.1 | Symbols:  | kelch repeat-containing F-box family p...   152   9e-38
AT1G30090.1 | Symbols:  | kelch repeat-containing F-box family p...    53   1e-07
AT1G55270.1 | Symbols:  | kelch repeat-containing F-box family p...    53   1e-07
AT1G80440.1 | Symbols:  | kelch repeat-containing F-box family p...    52   1e-07
AT1G15670.1 | Symbols:  | kelch repeat-containing F-box family p...    51   3e-07
AT3G63220.1 | Symbols:  | kelch repeat-containing F-box family p...    49   1e-06
AT3G63220.2 | Symbols:  | kelch repeat-containing F-box family p...    49   1e-06
AT2G24540.1 | Symbols: AFR | AFR (ATTENUATED FAR-RED RESPONSE) |...    48   3e-06
AT1G67480.2 | Symbols:  | kelch repeat-containing F-box family p...    47   5e-06
AT1G67480.1 | Symbols:  | kelch repeat-containing F-box family p...    47   5e-06

>AT2G44130.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr2:18253731-18254960 FORWARD
          Length = 409

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 111/162 (68%), Gaps = 7/162 (4%)

Query: 17  QQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLV 76
            +LIPGLP E+A+ECLV+VP QF S M+SVC SW++L+S+ SF Q R + G +E L+CLV
Sbjct: 17  HELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLV 76

Query: 77  QPL-PSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKTEFP 135
           QPL P + + +S+  T+ + +K+ + E        +   P+FGL++YNA  +TW +  FP
Sbjct: 77  QPLTPPIPASKSVDETLMVDEKKSEDE----SHPRVFCTPRFGLSVYNAAMSTWHRVAFP 132

Query: 136 --GKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
              +IP+FC+C+ +  A K+L++G WD +TL+P  DVY+L+ 
Sbjct: 133 EEEQIPLFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEF 174


>AT3G59940.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr3:22143009-22144265 FORWARD
          Length = 418

 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 9   KNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGN 68
           K   G     LIPGLP+E+A+ECLV+VP QFHS++KSVC SW+ +IS+ SF + R+  G 
Sbjct: 5   KKKSGEIRGDLIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGK 64

Query: 69  SEQLICLVQPL-----PSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYN 123
           +E L+CLVQPL     P++     ++      ++ +           I   P +GL++YN
Sbjct: 65  AESLLCLVQPLTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYN 124

Query: 124 ATYNTWQKTEFPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
           AT +TW +   P +IP+FC+C+AI  A K+L++G WD +TL+PV DV++LD 
Sbjct: 125 ATLDTWHRVAIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDF 176


>AT1G30090.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr1:10559746-10560942 REVERSE
          Length = 398

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 12  MGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLI-SNPSFYQLRLKSGNSE 70
           + +  + LIPGLPD++A+ CL++VP Q H + KSVC  W  L  +  +F+  R + G  +
Sbjct: 46  LSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKD 105

Query: 71  QLICLV 76
             + +V
Sbjct: 106 PWLFVV 111


>AT1G55270.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr1:20618333-20619925 REVERSE
          Length = 434

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 3   EEKNSIKNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQL 62
             KNS +    ++   L+PGLPD++A+ CL++VP   H  ++ VC  W  L S   FY  
Sbjct: 63  RRKNSKRERTRIQ-PPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQ 121

Query: 63  RLKSGNSEQLI 73
           R   G SE+ +
Sbjct: 122 RKLLGMSEEWV 132


>AT1G80440.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr1:30241763-30242827 FORWARD
          Length = 354

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 29/162 (17%)

Query: 18  QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
           +LIP LPD++A ECL++   Q    + SVC +W   +S   F   R  S +S++L+ L Q
Sbjct: 2   ELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQ 61

Query: 78  PLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT-EFPG 136
               +D   S                       I + P++ +++  +    W +    PG
Sbjct: 62  --ARVDPAGS---------------------GKIIATPEYRISVLESGSGLWTELPPIPG 98

Query: 137 K---IPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
           +   +P+FC+ +++ S   L++LG  D  T +    V++   
Sbjct: 99  QTKGLPLFCRLVSVGS--DLIVLGGLDPITWQAHDSVFVFSF 138


>AT1G15670.1 | Symbols:  | kelch repeat-containing F-box family
          protein | chr1:5390119-5391198 FORWARD
          Length = 359

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
          +LIP LP+ +A ECL++   +    M SVC  WQ  IS   F++ R  SG+S++L+ L Q
Sbjct: 2  ELIPDLPETVAYECLLRSSYKQFPLMASVCKLWQREISLSDFFRHRKASGHSQELVVLSQ 61

Query: 78 PLPSLDSIQSLTT 90
              +D ++ L +
Sbjct: 62 --ARVDPVKELVS 72


>AT3G63220.1 | Symbols:  | kelch repeat-containing F-box family
          protein | chr3:23357540-23358577 REVERSE
          Length = 345

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICL 75
          L+ G+P+ +A+ CL  VP   H N++ V  SW+  I +   +++R +  +SE L+C+
Sbjct: 4  LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 60


>AT3G63220.2 | Symbols:  | kelch repeat-containing F-box family
          protein | chr3:23357540-23358598 REVERSE
          Length = 352

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICL 75
          L+ G+P+ +A+ CL  VP   H N++ V  SW+  I +   +++R +  +SE L+C+
Sbjct: 11 LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67


>AT2G24540.1 | Symbols: AFR | AFR (ATTENUATED FAR-RED RESPONSE) |
          chr2:10426414-10427532 FORWARD
          Length = 372

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 2  AEEKNSIKNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSF 59
          AEE+   K+      Q LI GLP++IA  CL+++P  +H+  +SV  SW   I+NP F
Sbjct: 17 AEEETRTKS------QPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRF 68


>AT1G67480.2 | Symbols:  | kelch repeat-containing F-box family
          protein | chr1:25277294-25278529 FORWARD
          Length = 376

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 9  KNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGN 68
          +N+M   +  LIPGLPD++A +CL  VP     +M SVC  W+ ++ +  F  +R  +G 
Sbjct: 32 ENFM---DDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGM 88

Query: 69 SEQLI 73
           E+ +
Sbjct: 89 LEEWL 93


>AT1G67480.1 | Symbols:  | kelch repeat-containing F-box family
          protein | chr1:25277294-25278529 FORWARD
          Length = 376

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 9  KNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGN 68
          +N+M   +  LIPGLPD++A +CL  VP     +M SVC  W+ ++ +  F  +R  +G 
Sbjct: 32 ENFM---DDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGM 88

Query: 69 SEQLI 73
           E+ +
Sbjct: 89 LEEWL 93