Jatropha Genome Database

JcCA0296911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.20 - phase: 2 /partial
         (343 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39785.1 | Symbols:  | structural constituent of ribosome | c...   142   2e-34
AT3G01175.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   138   5e-33
AT5G39785.2 | Symbols:  | structural constituent of ribosome | c...   136   2e-32
AT3G20260.1 | Symbols:  | structural constituent of ribosome | c...   134   1e-31
AT1G69610.1 | Symbols:  | structural constituent of ribosome | c...   125   5e-29
AT1G73850.1 | Symbols:  | structural constituent of ribosome | c...    89   4e-18

>AT5G39785.1 | Symbols:  | structural constituent of ribosome |
           chr5:15929257-15932215 FORWARD
          Length = 606

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 159/319 (49%), Gaps = 25/319 (7%)

Query: 33  FYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYMSWDKR---A 89
           F+  Y ERMR  D+L+++++  +  + +K      S         S S   S + R   A
Sbjct: 272 FHRSYRERMRKLDILSFQKSYALGLLQSKSPQQATSTLGSNPSQTSFSSVFSVNIRLWKA 331

Query: 90  RK-------RLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAE 142
           +K       + ++ I+ + E VYV Q CLSWE LH QY K   L  +        + VA 
Sbjct: 332 KKSEIEPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEKAIELLESDVYGSRRYNEVAG 391

Query: 143 ELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAK--------EE 194
           E Q+F+VLL+RF+E+E FE  RV +Y++ R   ++LLQ+P +     + K        EE
Sbjct: 392 EFQQFQVLLQRFLENEPFEEPRVQHYIKRRCVLRNLLQIPVIREDGNKDKKNGRRRDYEE 451

Query: 195 MKIEGINVKEVLKAIERCILVFWVFVKIDNKKSW---WKFRSSLWTYPPV-EDPRDLKLL 250
                I   ++++ +E  I +FW FV+ D   S     K R+     P   ED  DL++ 
Sbjct: 452 NNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKSRTKSQIEPDHEEDSEDLEMF 511

Query: 251 VDLTRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLL---FTMIDIKLVSRVLQLS 307
            ++   LQ KE  L+D    +RC  R+  K  EE   +D +   F+ +D+KLV+RVL +S
Sbjct: 512 AEVKSQLQNKEKRLRDVLKSERCIIRRFQKHKEEDSTEDQVLHFFSQVDMKLVTRVLNMS 571

Query: 308 VISSTQLKWCQEKLDNIEF 326
            ++   L WC  KL  I F
Sbjct: 572 KLTRDHLVWCHNKLTKINF 590


>AT3G01175.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: stem, root;
           CONTAINS InterPro DOMAIN/s: Protein of unknown function
           DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana
           protein match is: structural constituent of ribosome
           (TAIR:AT5G39785.2); Has 100 Blast hits to 98 proteins in
           28 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi
           - 5; Plants - 48; Viruses - 0; Other Eukaryotes - 34
           (source: NCBI BLink). | chr3:59484-60845 FORWARD
          Length = 401

 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 18/163 (11%)

Query: 24  GFEDQDFDAFYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYM 83
           G ED   D  Y KY ERMRW+D+L+ +R+ G++ I N+   +  S               
Sbjct: 256 GVED---DHVYKKYCERMRWYDILSRDRSYGLNVITNQLTASSLSL-------------- 298

Query: 84  SWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAEE 143
            W K A KR+ +S++ D ELVYVAQ CLSWEAL HQY  V   +      G F   ++ E
Sbjct: 299 -WGKTAEKRIKQSMKKDLELVYVAQVCLSWEALQHQYILVRDSSNPADSRGRFDDDISRE 357

Query: 144 LQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSG 186
            Q F+VLLERF+EDER EGKRV ++V+ RF   S  QVP++SG
Sbjct: 358 FQNFQVLLERFLEDERCEGKRVLSFVQRRFELISFFQVPRLSG 400


>AT5G39785.2 | Symbols:  | structural constituent of ribosome |
           chr5:15929257-15932215 FORWARD
          Length = 607

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 26/320 (8%)

Query: 33  FYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYMSWDKR---A 89
           F+  Y ERMR  D+L+++++  +  + +K      S         S S   S + R   A
Sbjct: 272 FHRSYRERMRKLDILSFQKSYALGLLQSKSPQQATSTLGSNPSQTSFSSVFSVNIRLWKA 331

Query: 90  RK-------RLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAE 142
           +K       + ++ I+ + E VYV Q CLSWE LH QY K   L  +        + VA 
Sbjct: 332 KKSEIEPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEKAIELLESDVYGSRRYNEVAG 391

Query: 143 ELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAK--------EE 194
           E Q+F+VLL+RF+E+E FE  RV +Y++ R   ++LLQ+P +     + K        EE
Sbjct: 392 EFQQFQVLLQRFLENEPFEEPRVQHYIKRRCVLRNLLQIPVIREDGNKDKKNGRRRDYEE 451

Query: 195 MKIEGINVKEVLKAIERCILVFWVFVKIDNKKSW---WKFRSSLWTYPPV-EDPRDLKLL 250
                I   ++++ +E  I +FW FV+ D   S     K R+     P   ED  DL++ 
Sbjct: 452 NNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKSRTKSQIEPDHEEDSEDLEMF 511

Query: 251 VDLTRNLQK-KELWLKDSQGKQRCWFRKVVKPLEESQRKDLL---FTMIDIKLVSRVLQL 306
            ++   LQ   E  L+D    +RC  R+  K  EE   +D +   F+ +D+KLV+RVL +
Sbjct: 512 AEVKSQLQNVSEKRLRDVLKSERCIIRRFQKHKEEDSTEDQVLHFFSQVDMKLVTRVLNM 571

Query: 307 SVISSTQLKWCQEKLDNIEF 326
           S ++   L WC  KL  I F
Sbjct: 572 SKLTRDHLVWCHNKLTKINF 591


>AT3G20260.1 | Symbols:  | structural constituent of ribosome |
           chr3:7064190-7065751 REVERSE
          Length = 437

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 160/334 (47%), Gaps = 38/334 (11%)

Query: 30  FDAFYNKYAERMRWFDVLNYE--RTCGIS----------TILNKQIGTP------NSFES 71
           FDA Y KY ERM +FD L+ +  +  GI              +K++ +P        F+ 
Sbjct: 120 FDAVYEKYCERMLFFDRLSSQQLKETGIGIAPSPSTPSPRSASKKLSSPFRCLSLKKFDV 179

Query: 72  IEDEDFSVSPYMSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTS 131
            E++   + P    D             D E  YVAQ CL+WEALH QY ++  L     
Sbjct: 180 PEEDIEHLQPTEVDDPY----------QDLETAYVAQLCLTWEALHCQYTQLSHLISCQP 229

Query: 132 QNGIFSHHVAEELQKFKVLLERFMEDERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQ 190
           +     +H A+  Q+F VLL+R++E+E FE G R   Y R R +   LLQ PK+ G    
Sbjct: 230 ETPTCYNHTAQLFQQFLVLLQRYIENEPFEQGSRSELYARARNAMPKLLQAPKIQG--SD 287

Query: 191 AKEEMKIEGINV--KEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLK 248
            KE  K  G  V   +++K IE  IL F VF+K+D KK        L+            
Sbjct: 288 KKEMEKDTGFMVLADDLIKVIESSILTFNVFLKMDKKKPNGGIH--LFGNHNNNHVNSTT 345

Query: 249 LLVDLTRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSV 308
            L+ +  ++ KK +  K+   K +   RK   P +  +   LLF  IDIKL +RVL++S 
Sbjct: 346 PLLLVQSSIDKKRVKAKELSKKTK-GLRKKSWP-QTWEGVQLLFAAIDIKLATRVLRMSK 403

Query: 309 ISSTQLKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           IS  QL WC+EK+  + F  GK+ R   S  LFP
Sbjct: 404 ISKEQLLWCEEKMKKLNFSAGKLQRH-PSPILFP 436


>AT1G69610.1 | Symbols:  | structural constituent of ribosome |
           chr1:26186954-26189349 FORWARD
          Length = 636

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 181/342 (52%), Gaps = 26/342 (7%)

Query: 11  NESPAMELEVSKIGFE-DQDFDAF------YNKYAERMRWFDVLNYERTCGISTILNKQI 63
           +E+P  EL+  KI  + DQ  D        Y  YA +MR  DV++ +    IS +  K  
Sbjct: 289 SETPLQELKPLKIEPKPDQHKDRIAEIHKVYKNYAVKMRKLDVIDSQTMHSISLLKLKDS 348

Query: 64  GTPNSFESIEDEDF---SVSPY--MSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHH 118
             P+       +     ++ P+   + +    +RL++    DFE VYV Q CLSWE L  
Sbjct: 349 SKPSRNTDKPPKSSLHQNIWPFKKHTLECDPSERLVKEASRDFETVYVGQVCLSWEMLRW 408

Query: 119 QYRKVEAL--AITTSQNGIFSHHVAEELQKFKVLLERFMEDERFEGK-RVWNYVRGRFSF 175
           QY KV      +TT Q  +    VA E Q F+VLL+RF+E+E F+   RV  Y++ R  F
Sbjct: 409 QYDKVLEFDSQVTTYQYNL----VAGEFQLFQVLLQRFVENEPFQNSSRVETYLKNRRHF 464

Query: 176 KSLLQVPKVSGFFEQAKEEMKIEG-INVK-EVLKAIER-CILVFWVFVKIDNKKSWWKFR 232
           ++ LQ+P V      +K++ + EG   VK E+L+ I R  + VFW F+  D  +     +
Sbjct: 465 QNFLQIPLVRDD-RSSKKKCRYEGEFAVKTEMLREIIRESMSVFWEFLCADKDEFTSMMK 523

Query: 233 SSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQ---RKD 289
            S  T    +D  DL+LL D+  +LQKKE  LK+ Q  Q C  +K+ K   +S    + +
Sbjct: 524 VSHQTQVSPQDSLDLELLTDIRTHLQKKEKKLKEIQRSQSCIVKKLKKNESKSSIGVKDE 583

Query: 290 LLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFKEGKI 331
           LL   I+++LVSRV+ +S +++ +L WCQEKL+ I F   KI
Sbjct: 584 LLIAKIELRLVSRVMYMSKLTTEKLHWCQEKLEKISFNGRKI 625


>AT1G73850.1 | Symbols:  | structural constituent of ribosome |
           chr1:27767949-27770386 FORWARD
          Length = 559

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 132/257 (51%), Gaps = 20/257 (7%)

Query: 100 DFELVYVAQSCLSWEALHHQYRKVEALAITTSQ--NGIF-SHHVAEELQKFKVLLERFME 156
           + E  YVAQ CL+WEAL   Y+  E    TT +  N +     +A++ + F +LL+R++E
Sbjct: 309 ELESAYVAQICLTWEALSWNYKNFERKRSTTQRSFNDVGCPAGIADQFRTFHILLQRYVE 368

Query: 157 DERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEG-----INVKEVLKAIE 210
           +E +E G+R   Y R R     LL VP+   + E+ ++E + E      I+    L  +E
Sbjct: 369 NEPYEHGRRPEIYARMRTLAPKLLLVPEYQDYEEEEEKEDENEEGFRSRISSASFLMIME 428

Query: 211 RCILVFWVFVKIDNKKSWWKFRSSLWTYP---PVEDPRDLKLLVDLTRNLQKKELWLKDS 267
            CI  F  F++ D +K   K   + +      PV DP  + L+  +    + K   ++  
Sbjct: 429 ECIRTFMNFLQADKEKPCQKIIKAFFGRSKRGPV-DPTLVHLMKKVNTKKKTKLKEMRRG 487

Query: 268 QGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFK 327
            GK   + RK    +EE    ++L  +ID+K+VSRVL+++ ++   L WC+EK+  ++  
Sbjct: 488 -GK---YMRKKKMSIEEEM--EILMGLIDLKVVSRVLRMNEMNEENLHWCEEKMSKVKII 541

Query: 328 EGKIVRACSSGPL-FPP 343
           +G  V    S PL FPP
Sbjct: 542 QGGKVLQRDSTPLFFPP 558