Jatropha Genome Database

JcCA0296911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.10 - phase: 0 /partial
         (296 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2); transf...   160   9e-40
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SA...    64   2e-10

>AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2);
           transferase, transferring glycosyl groups |
           chr3:62456-65678 REVERSE
          Length = 792

 Score =  160 bits (405), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 154/308 (50%), Gaps = 54/308 (17%)

Query: 38  PQRAFSFAVSNGGFSLRFKPVRATAKEGVNDDGSDDPLQATIEKSKKVLALQRDLLQQIS 97
           P  + SF   +     R K V      G +DD  +D LQATI+KSKKVLA+QR+LL QI+
Sbjct: 37  PSGSLSFRSRSFVLGHRCKCVSRVEASGSDDDEPEDALQATIDKSKKVLAMQRNLLHQIA 96

Query: 98  ERRKLVXXXXXXXFDQEIDRTSYDQRESSLQPDNASTSRKNILEQQNGNGGIVPSSYVDS 157
           ERRKLV        D +  + S  Q  +S    N   ++K I++  + NG + PS+Y  S
Sbjct: 97  ERRKLVSSIKESTPDLDDAKASSKQESASSVNANTDATKKEIMDG-DANGSVSPSTYGKS 155

Query: 158 TADELPETASSAVSRSYFKGEEE----------FEQPKSPK--------TDSSVKNSTKQ 199
           +  + PE  + + S    K  ++             P+ P           S V +S   
Sbjct: 156 SLSKEPEAKTFSPSTESLKNRKQSSASVISSSPVTSPQKPSDVATNGKPWSSVVASSVDP 215

Query: 200 PKDASS-----EK-------------------------SFLTNTLEVSVINDEK-TEGSN 228
           P   SS     EK                         S+LT   + S +  EK  E + 
Sbjct: 216 PYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFWSDPLPSYLTKAPQTSTMKTEKYVEKTP 275

Query: 229 ESASPEVNNVGSDSMTEHAKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGSLPKALA 288
           + AS E N  G D      KPPPLAGANVMNVILVAAECAP+SKTGGLGDVAG+LPK+LA
Sbjct: 276 DVASSETNEPGKDE----EKPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKSLA 331

Query: 289 RRGHRVMV 296
           RRGHRVMV
Sbjct: 332 RRGHRVMV 339


>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF
           SALICYLIC ACID INSENSITIVITY 1); starch synthase/
           transferase, transferring glycosyl groups |
           chr5:8266934-8270860 FORWARD
          Length = 652

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 33/40 (82%)

Query: 257 VMNVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMV 296
           V N++ V +E AP+SKTGGLGDV GSLP ALA RGHRVMV
Sbjct: 141 VNNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMV 180