Jatropha Genome Database

JcCA0296871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296871.10 + phase: 0 /partial
         (255 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHO...   157   5e-39
AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM...   109   1e-24
AT1G23380.1 | Symbols: KNAT6, KNAT6L, KNAT6S | KNAT6; DNA bindin...   103   1e-22
AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNAT6; DNA bindin...    98   4e-21
AT1G70510.1 | Symbols: KNAT2, ATK1 | KNAT2 (KNOTTED-LIKE FROM AR...    96   2e-20
AT1G14760.2 | Symbols: KNATM | KNATM (KNOX ARABIDOPSIS THALIANA ...    59   3e-09
AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    59   4e-09
AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    59   4e-09

>AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT
           MERISTEMLESS); transcription factor |
           chr1:23058796-23061722 REVERSE
          Length = 382

 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 79/99 (79%), Gaps = 6/99 (6%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXX----MGPTGTSCVGEDP 165
           VKAKIMAHPHYHRLLAAY+NCQKVGAPPEVV                MGPTG  C+GEDP
Sbjct: 121 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTG--CLGEDP 178

Query: 166 ALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFK 204
            LDQFMEAYCEML KYEQELSKPFKEAM+FLQRVECQFK
Sbjct: 179 GLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFK 217


>AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM
           ARABIDOPSIS THALIANA); transcription factor |
           chr4:5147969-5150610 REVERSE
          Length = 398

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 3/101 (2%)

Query: 109 SVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVG---EDP 165
           ++KAKI+AHPHY  LL AY++CQK+GAPP+VV                 T  V     DP
Sbjct: 133 AMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSRDP 192

Query: 166 ALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
            LDQFMEAYC+ML KY +EL++P +EAM F++R+E Q   L
Sbjct: 193 ELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSML 233


>AT1G23380.1 | Symbols: KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding /
           transcription activator/ transcription factor |
           chr1:8297499-8302492 REVERSE
          Length = 327

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGAPPEV--VXXXXXXXXXXXXMGPTGTSCVGEDPAL 167
           +KAKI  HP Y RLL AYI+CQKVGAPPE+  +                 +SC G DP L
Sbjct: 85  IKAKIACHPSYPRLLQAYIDCQKVGAPPEIACLLEEIQRESDVYKQEVVPSSCFGADPEL 144

Query: 168 DQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           D+FME YC++L KY+ +L++PF EA  FL ++E Q + L
Sbjct: 145 DEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNL 183


>AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding /
           transcription activator/ transcription factor |
           chr1:8297499-8302492 REVERSE
          Length = 329

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 4/101 (3%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQK--VGAPPEV--VXXXXXXXXXXXXMGPTGTSCVGEDP 165
           +KAKI  HP Y RLL AYI+CQK  VGAPPE+  +                 +SC G DP
Sbjct: 85  IKAKIACHPSYPRLLQAYIDCQKKQVGAPPEIACLLEEIQRESDVYKQEVVPSSCFGADP 144

Query: 166 ALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
            LD+FME YC++L KY+ +L++PF EA  FL ++E Q + L
Sbjct: 145 ELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNL 185


>AT1G70510.1 | Symbols: KNAT2, ATK1 | KNAT2 (KNOTTED-LIKE FROM
           ARABIDOPSIS THALIANA 2); transcription factor |
           chr1:26576635-26582145 FORWARD
          Length = 310

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 106 SAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEV--VXXXXXXXXXXXXMGPTGTSCVGE 163
           S + +K+KI +HP Y RLL  YI+CQKVGAP E+  +                  SC G 
Sbjct: 65  SLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSCFGA 124

Query: 164 DPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           DP LD+FME YC++L KY+ +L++PF EA  F+ ++E Q + L
Sbjct: 125 DPELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNL 167


>AT1G14760.2 | Symbols: KNATM | KNATM (KNOX ARABIDOPSIS THALIANA
           MEINOX) | chr1:5084530-5085213 REVERSE
          Length = 138

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGA----PPEVVXXXXXXXXXXXXMGPTGTSCVGEDP 165
           +K +I +HP Y  LL +++NC KV +     PE++            + P  +S      
Sbjct: 33  LKKRISSHPLYGLLLHSHLNCLKVCSGDFDSPEIMNTADDLALSKLSLHPDSSS-EATSS 91

Query: 166 ALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSSP 211
            LDQFMEAYC  L + ++ + KP  E   F+  V  Q   + +SSP
Sbjct: 92  ELDQFMEAYCSTLRELKEAMEKPLTETHRFVDAVYTQLNDIVMSSP 137


>AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738087 FORWARD
          Length = 419

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 23/137 (16%)

Query: 101 DSNDGSAASV------------KAKIMAHPHYHRLLAAYINCQKVGAP----PEV---VX 141
           + NDG  A+             KA+I++HP Y +LL+A++ C ++  P    P +   + 
Sbjct: 138 NKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLA 197

Query: 142 XXXXXXXXXXXMGPTGTSCVGEDPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQ 197
                      +G      VG+D  LDQFM  Y  +L  ++++L +  +    EA++   
Sbjct: 198 QSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACW 257

Query: 198 RVECQFKALTVSSPNSG 214
            +E   ++LT  SP  G
Sbjct: 258 EIEQSLQSLTGVSPGEG 274


>AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738115 FORWARD
          Length = 431

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 23/137 (16%)

Query: 101 DSNDGSAASV------------KAKIMAHPHYHRLLAAYINCQKVGAP----PEV---VX 141
           + NDG  A+             KA+I++HP Y +LL+A++ C ++  P    P +   + 
Sbjct: 138 NKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLA 197

Query: 142 XXXXXXXXXXXMGPTGTSCVGEDPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQ 197
                      +G      VG+D  LDQFM  Y  +L  ++++L +  +    EA++   
Sbjct: 198 QSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACW 257

Query: 198 RVECQFKALTVSSPNSG 214
            +E   ++LT  SP  G
Sbjct: 258 EIEQSLQSLTGVSPGEG 274