Jatropha Genome Database

JcCA0296741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296741.10 + phase: 0 
         (122 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36930.1 | Symbols:  | zinc finger (C2H2 type) family protein...   185   4e-48

>AT2G36930.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr2:15510002-15511347 REVERSE
          Length = 198

 Score =  185 bits (470), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 102/119 (85%), Gaps = 3/119 (2%)

Query: 3   GKCPSRKVKKRRYSHKTARRSKFLLLFWLRDDAVYEELQKPDVEKKSLPLDEDLPGMGQY 62
           G+CP+RKVKKRR SHKTARR KF +     DD VY EL+KP+ E K L LDEDLPGMGQ+
Sbjct: 2   GRCPTRKVKKRRLSHKTARRDKFEVK---GDDLVYTELRKPETEIKPLQLDEDLPGMGQF 58

Query: 63  YCLHCDRYFANVTVRDEHFKTKRHRKRLKQMMGPAPHTQLDADLAGGMGMPDNGPKLMS 121
           YCLHCDRYF+NV+VRD+HFKTK+H+KR+  MMG APH+QLDADLAGGMGMPDNGPKLMS
Sbjct: 59  YCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLMS 117



 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 8/91 (8%)

Query: 31  LRDDAVYEELQKPDVEKKSLPLDEDLPGMGQYYCLHCDRYFANVTVRDEHFKTKRHRKRL 90
           L  + V+ EL+KP+ E        DLPGMGQ+ CL C R F+N +V D HFKTK+H+KR+
Sbjct: 115 LMSNLVFTELRKPETE--------DLPGMGQFNCLLCHRNFSNASVMDYHFKTKKHKKRV 166

Query: 91  KQMMGPAPHTQLDADLAGGMGMPDNGPKLMS 121
           K++  PAPH+QLDADLAGGMGMPDNGPKLMS
Sbjct: 167 KKIERPAPHSQLDADLAGGMGMPDNGPKLMS 197