Jatropha Genome Database

JcCA0296711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296711.20 + phase: 0 /pseudo/partial
         (313 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21520.1 | Symbols:  | transducin family protein / WD-40 repe...   469   e-133
AT5G60940.2 | Symbols:  | transducin family protein / WD-40 repe...    49   5e-06

>AT4G21520.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:11447514-11450377 REVERSE
          Length = 425

 Score =  469 bits (1208), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 220/297 (74%), Positives = 249/297 (83%), Gaps = 4/297 (1%)

Query: 1   MGEGEQQEAMEVATETTQSIEQDYSWPLIRFDLPPRRIHHFYKQFRTSSNANNFLKGVKW 60
           MGE E+  A E      +S EQ  SWP +RFD+ P R HHF KQFRT+ N NNFLKG+KW
Sbjct: 1   MGE-EEAVAEENGGLKVESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKW 59

Query: 61  SPDGSCFLTSTEDNTLRLFSLPDDGSGSDSNACSINV-DEDSYDASLVVNEGESVYDFCW 119
           SPDGSCFL S+EDNTL LF LP DG   DSN   + V +EDSY ASL+VNEGESVYDFCW
Sbjct: 60  SPDGSCFLASSEDNTLSLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCW 117

Query: 120 YPYMTASEPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIAFNPAGTK 179
           YPYM+ S+P++CVFA++TRDHPIHLWD++SG LRCTYRAYDA+DEITAAFS+ FNP GTK
Sbjct: 118 YPYMSVSDPLTCVFATSTRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTK 177

Query: 180 IFAGYNKSVRVFDIHRPGRDFEQYSTLQGNKEGQTGIISAIAVSPTRSGMLATGSYSQTA 239
           IFAGYN S+RVFD+HRPGRDF QYSTLQ NKEGQ GI+S +A SPT SGMLA GSY QT 
Sbjct: 178 IFAGYNSSIRVFDLHRPGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTT 237

Query: 240 AIFREDNMELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDLRKTVEVVYK 296
            I+REDNMELLYVLHGQEGG+THVQFSKDGNYLYTGGRKDPYILCWD+RK+VE+VYK
Sbjct: 238 GIYREDNMELLYVLHGQEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYK 294


>AT5G60940.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:24523757-24525655 FORWARD
          Length = 337

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 106/245 (43%), Gaps = 25/245 (10%)

Query: 46  RTSSNANNFLKGVKWSPDGSCFLTSTEDNTLRLFSLPDDGSGSDSNACSINVDEDSYDAS 105
           +T S   + ++  ++SPDG  F T   D +++LF +P        +  +  +    YD +
Sbjct: 25  KTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHA 84

Query: 106 LVVNEGESVYDFCWYPYMTASEPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEI 165
             +N+     DF          P S +  S+ +D+ I  +D S    +   RA+    + 
Sbjct: 85  EPIND----LDF---------HPRSTILISSAKDNCIKFFDFSKTTAK---RAFKVFQDT 128

Query: 166 TAAFSIAFNPAGTKIFAGYNKSV-RVFDIHRPGRDFEQYSTLQGNKEGQTGIISAIAVSP 224
               SI+F+P+G  + AG +  +  ++D++     ++ +        G +G I+ +  S 
Sbjct: 129 HNVRSISFHPSGEFLLAGTDHPIPHLYDVN----TYQCFLPSNFPDSGVSGAINQVRYSS 184

Query: 225 TRSGMLATGSYSQTAAIFREDNMELLYVLHGQEGG--ITHVQFSKDGNYLYTGGRKDPYI 282
           T S +  T S      +F   + + +  +    G   +T   F+KD  ++ + G KD  +
Sbjct: 185 TGS-IYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSG-KDSTV 242

Query: 283 LCWDL 287
             W++
Sbjct: 243 KLWEI 247