Jatropha Genome Database

JcCA0296621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296621.20 + phase: 0 
         (414 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21880.2 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PRO...   538   e-153
AT1G21880.1 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PRO...   496   e-140
AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...   491   e-139
AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED PRO...   129   4e-30
AT2G23770.1 | Symbols:  | protein kinase family protein / peptid...    55   1e-07

>AT1G21880.2 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 1 PRECURSOR) | chr1:7680689-7682526 FORWARD
          Length = 416

 Score =  538 bits (1387), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/336 (76%), Positives = 295/336 (87%), Gaps = 6/336 (1%)

Query: 9   LFLIFINVVAF------VTSKSTIEPCSNNDSCNALLGYTLYTDLKVSEVASLFQIDPIA 62
           +FLIF++++         T+KSTIEPCS+ND+CNALLGYTLYTDLKVSEVASLFQ+DPI+
Sbjct: 8   IFLIFVSLILASSLTFTATAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPIS 67

Query: 63  LLTANSIDISYPDIENHILPSQYFLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADSI 122
           +L AN+IDISYPD+ENHILPS+ FLKIPITCSCVDGIRKSVSTHYKTRPSD L SIADS+
Sbjct: 68  ILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSV 127

Query: 123 YSGLVSADQIKEANSIQDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVLEIDTLV 182
           Y GLVSA+QI+EANS+ DPS+LDVG SLV+PLPC CFNGTDNSLPA+YLSYVV EIDTLV
Sbjct: 128 YGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLV 187

Query: 183 GIASRYSTTITDLMNVNAMGNPAIKAGDILAVPLPACASKFPRYAFDYGLIVPNGSYAIT 242
           GIA RYSTTITDLMNVNAMG P + +GDILAVPL ACASKFPRYA D+GLIVPNGSYA+ 
Sbjct: 188 GIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALA 247

Query: 243 ASHCVQCSCGPGNLDLYCMPASLAVSCSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGG 302
           A HCVQCSC  G+ +LYC PASLAVSCSSMQC+NSNLMLGN+T  ++SAGCNVT+C Y G
Sbjct: 248 AGHCVQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNG 307

Query: 303 YVNGSIVTTLSTSLQPRCPGPQEFPPLLAPPTTVNK 338
             NG+I+T L+ SLQPRCPGPQ+F PLLAPP TV +
Sbjct: 308 IANGTILTMLTRSLQPRCPGPQQFAPLLAPPDTVPR 343


>AT1G21880.1 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 1 PRECURSOR) | chr1:7680689-7682048 FORWARD
          Length = 316

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/308 (77%), Positives = 272/308 (88%), Gaps = 6/308 (1%)

Query: 9   LFLIFINVVAF------VTSKSTIEPCSNNDSCNALLGYTLYTDLKVSEVASLFQIDPIA 62
           +FLIF++++         T+KSTIEPCS+ND+CNALLGYTLYTDLKVSEVASLFQ+DPI+
Sbjct: 8   IFLIFVSLILASSLTFTATAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPIS 67

Query: 63  LLTANSIDISYPDIENHILPSQYFLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADSI 122
           +L AN+IDISYPD+ENHILPS+ FLKIPITCSCVDGIRKSVSTHYKTRPSD L SIADS+
Sbjct: 68  ILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSV 127

Query: 123 YSGLVSADQIKEANSIQDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVLEIDTLV 182
           Y GLVSA+QI+EANS+ DPS+LDVG SLV+PLPC CFNGTDNSLPA+YLSYVV EIDTLV
Sbjct: 128 YGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLV 187

Query: 183 GIASRYSTTITDLMNVNAMGNPAIKAGDILAVPLPACASKFPRYAFDYGLIVPNGSYAIT 242
           GIA RYSTTITDLMNVNAMG P + +GDILAVPL ACASKFPRYA D+GLIVPNGSYA+ 
Sbjct: 188 GIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALA 247

Query: 243 ASHCVQCSCGPGNLDLYCMPASLAVSCSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGG 302
           A HCVQCSC  G+ +LYC PASLAVSCSSMQC+NSNLMLGN+T  ++SAGCNVT+C Y G
Sbjct: 248 AGHCVQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNG 307

Query: 303 YVNGSIVT 310
             NG+I+T
Sbjct: 308 IANGTILT 315


>AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr1:29173726-29175387
           FORWARD
          Length = 423

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/335 (69%), Positives = 283/335 (84%), Gaps = 1/335 (0%)

Query: 5   KTIILFLIFINVVA-FVTSKSTIEPCSNNDSCNALLGYTLYTDLKVSEVASLFQIDPIAL 63
           K ++LFLI  + +A   T+KSTIEPCS+ D+CN+LLGYTLYTDLKV+EVASLFQ+DP+++
Sbjct: 6   KPLLLFLILASSLASMATAKSTIEPCSSKDTCNSLLGYTLYTDLKVTEVASLFQVDPVSM 65

Query: 64  LTANSIDISYPDIENHILPSQYFLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADSIY 123
           L +NSIDISYPD+ENH+LP++ FLKIPITCSCVDGIRKS+STHYKTR SDTL SIADS+Y
Sbjct: 66  LLSNSIDISYPDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSVY 125

Query: 124 SGLVSADQIKEANSIQDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVLEIDTLVG 183
            GLVS +QI+ ANS  D SVLDVG  LV+PLPC CFNGTD SLPA+YLSYVV  IDT+ G
Sbjct: 126 GGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTMAG 185

Query: 184 IASRYSTTITDLMNVNAMGNPAIKAGDILAVPLPACASKFPRYAFDYGLIVPNGSYAITA 243
           IA R+ST++TDL NVNAMG P I  GDILAVPL AC+S FP+YA DYGLI+PNGSYA+TA
Sbjct: 186 IAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTA 245

Query: 244 SHCVQCSCGPGNLDLYCMPASLAVSCSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGGY 303
            HCVQCSC  G+  +YC PAS++VSCSSM+C+NSN MLGN+T  +SS+GC +T+CSY G+
Sbjct: 246 GHCVQCSCVLGSRSMYCEPASISVSCSSMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGF 305

Query: 304 VNGSIVTTLSTSLQPRCPGPQEFPPLLAPPTTVNK 338
            +G+I+TTLS SLQPRCPGPQ+  PL+APP  V K
Sbjct: 306 ASGTILTTLSMSLQPRCPGPQQLAPLIAPPDNVPK 340


>AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 2 PRECURSOR) | chr2:7459156-7460648 FORWARD
          Length = 350

 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 158/312 (50%), Gaps = 32/312 (10%)

Query: 34  SCNALLGYTLYTDLKVSEVASLFQIDPI-ALLTANSIDISYPDIENHILPSQYFLKIPIT 92
           +C +L+GY+      +  + +LF +  + ++L AN++ ++    +  + P+Q  +++PI 
Sbjct: 37  TCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLNTSR-DQRVNPNQ-VVRVPIH 94

Query: 93  CSCVDGIRKS-VSTHYKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVLDVGQSLV 151
           CSC +G   S     Y  +  D L+ +A  I+ GLV+ ++I E N I DP+ +++GQ   
Sbjct: 95  CSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFW 154

Query: 152 VPLPCTC--FNGTDNSLPAIYLSYVVLEIDTLVGIASRYSTTITDLMNVNA-MGNPAIKA 208
           +PLPC+C   NG D     ++ ++VV    +L  IA+++ T  T L  +N  +G+  + A
Sbjct: 155 IPLPCSCDKLNGED----VVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLA 210

Query: 209 GDILAVPLPACASKFPRYAFDYGLIVPNGSYAITASHCVQCSCGP-GNLDLYCMPASLAV 267
              L VPL AC+S   + + D  L++ N SY  TA++CV+C+C    N  L C       
Sbjct: 211 DKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQ------ 264

Query: 268 SCSSMQCKNSNLM----LGNVTWARSSAGCNV-TSCSYGGYVNGSIVTTLSTSLQPRCP- 321
             SS + K SN            A  +A C     C Y GY N +I TT S    P CP 
Sbjct: 265 --SSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTAS----PACPD 318

Query: 322 --GPQEFPPLLA 331
             GP  +   L+
Sbjct: 319 SAGPDNYASTLS 330


>AT2G23770.1 | Symbols:  | protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein |
           chr2:10120242-10122080 REVERSE
          Length = 612

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 35/219 (15%)

Query: 8   ILFLIFINVVAFVTSKS-----TIEPCSNNDSCNALLGYT---------LYTDLK----- 48
           +L  I +++ +F T++      +   CS +D+  ++ GY+          Y   +     
Sbjct: 8   LLVFILLSLSSFATAQQPYVGISTTDCSVSDNTTSVFGYSCNGLNKTCQAYVIFRSTPSF 67

Query: 49  --VSEVASLFQIDP--IALLTANSIDISYPDIENHILPSQYFLKIPITCSCVDGIRKSVS 104
             V+ ++SLF +DP  ++ L   S   S+P  +  I        IP+TCSC     +S  
Sbjct: 68  STVTSISSLFSVDPSLVSSLNDASPSTSFPSGQQVI--------IPLTCSCTGDDSQSNI 119

Query: 105 THYKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVLDVGQSLVVPLPCTCFNGTD- 163
           T Y  +P+D+  +IA+    GL +   + + N++   S+   G  +VVP+ C C      
Sbjct: 120 T-YTIQPNDSYFAIANDTLQGLSTCQALAKQNNVSSQSLFP-GMRIVVPIRCACPTAKQI 177

Query: 164 NSLPAIYL-SYVVLEIDTLVGIASRYSTTITDLMNVNAM 201
           N     YL SY V+  DT+  I+ R+    +  +  N M
Sbjct: 178 NEDGVKYLMSYTVVFEDTIAIISDRFGVETSKTLKANEM 216