Jatropha Genome Database

JcCA0296141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.20 - phase: 2 /TE
         (570 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    55   1e-07

>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 71  LHSSVSDIIFTSIMTYETAKEIWDSLK--NEYQSNEQTKLMQVLNLKREFEMQKMKTSGG 128
           L SS++D +F   ++  +AK++WD L+  NE  +  + + + +  L+++ E  KM     
Sbjct: 77  LQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKES 136

Query: 129 VKEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGEL 188
              Y++  + I+ ++     E  +  + + +  +LS  F+   S LE   ++ +++   L
Sbjct: 137 GSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSL 196

Query: 189 TNALQAVEQRRAFREDNTIEAAFVAKTTNKFLSKRRKFPLCGICKKDNHNENDC 242
                         E +T EA F      +  SK  K+  CG+C K+NHN+ DC
Sbjct: 197 VEYFYY-----RVHESSTEEAIFGLLKDLRLKSKSEKW--CGLCYKNNHNQEDC 243