Jatropha Genome Database

JcCA0296141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.10 - phase: 1 /pseudo/partial
         (92 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02410.1 | Symbols:  | unknown protein | chr2:632713-634613 F...   102   6e-23

>AT2G02410.1 | Symbols:  | unknown protein | chr2:632713-634613
           FORWARD
          Length = 308

 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 57/61 (93%)

Query: 30  FVWSCKALVSEIKASHKEMERMLQEQRXTSFQGRLLKHNLDSEVVDALKDLRNKLAENES 89
           ++WS KALVSEIK+ HKE+E+M+QE R TSFQGRLLKHNLDSEVVDALKDLR+KL+ENE+
Sbjct: 247 YIWSSKALVSEIKSMHKEVEKMMQETRSTSFQGRLLKHNLDSEVVDALKDLRDKLSENET 306

Query: 90  K 90
           K
Sbjct: 307 K 307