Jatropha Genome Database

JcCA0295991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0295991.10 - phase: 0 /partial
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29200.1 | Symbols: CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L...   136   8e-33
AT1G69370.1 | Symbols: CM3, cm-3 | CM3 (chorismate mutase 3); ch...   122   1e-28
AT5G10870.1 | Symbols: ATCM2 | ATCM2 (chorismate mutase 2); chor...    62   1e-10

>AT3G29200.1 | Symbols: CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1);
           L-ascorbate peroxidase/ chorismate mutase |
           chr3:11164582-11166258 REVERSE
          Length = 340

 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 76/91 (83%), Gaps = 1/91 (1%)

Query: 53  SVEASASSIG-LEKKKRVDESENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPD 111
           SV A  +  G L  KKRVDESE+LTLE IR SLIRQEDSIIF LLER++YCYNADTYDP 
Sbjct: 63  SVHAVMTLAGSLTGKKRVDESESLTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPT 122

Query: 112 AFSMDGFHGSLVEYMLREIEKLHAQVGRYKS 142
           AF MDGF+GSLVEYM++  EKLHA+VGR+KS
Sbjct: 123 AFDMDGFNGSLVEYMVKGTEKLHAKVGRFKS 153


>AT1G69370.1 | Symbols: CM3, cm-3 | CM3 (chorismate mutase 3);
           chorismate mutase | chr1:26080098-26081559 FORWARD
          Length = 316

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 70/98 (71%)

Query: 68  RVDESENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEYML 127
           RVDESE L LE IR SLIRQEDSIIF+LLER+QY YNADTYD DAF+M+GF GSLVE+M+
Sbjct: 62  RVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSLVEFMV 121

Query: 128 REIEKLHAQVGRYKSXXXXXXXXXXXXXXXXXXXQYPQ 165
           RE EKLHA+V RYKS                   QYPQ
Sbjct: 122 RETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQ 159


>AT5G10870.1 | Symbols: ATCM2 | ATCM2 (chorismate mutase 2);
           chorismate mutase | chr5:3430691-3432272 REVERSE
          Length = 265

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 47/70 (67%)

Query: 72  SENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEYMLREIE 131
           S  L+L+ IR SLIRQED+I+FSL+ER+++  N+  ++       G   SL E+ +RE E
Sbjct: 14  SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73

Query: 132 KLHAQVGRYK 141
            + A+VGRY+
Sbjct: 74  IIQAKVGRYE 83