Jatropha Genome Database

JcCA0294381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294381.10 + phase: 0 /partial
         (109 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35590.1 | Symbols:  | RWP-RK domain-containing protein | chr...    52   7e-08

>AT4G35590.1 | Symbols:  | RWP-RK domain-containing protein |
           chr4:16892909-16894865 FORWARD
          Length = 370

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 5   FKVMELFEGQVIGLWQCMFAFHADXXXXXXXXXXXXXXXRNPKLKSIPTLANDLQLIFKL 64
           F+  E+ EG V G W+C+F F  +               RNPKL+ IP LAN+L+ I +L
Sbjct: 96  FRRPEISEGSVFGTWRCIFVFRFNHSLPRFPTLLCLS--RNPKLEDIPNLANELKFISEL 153

Query: 65  S-SRTADGESLQFLSKGKCERARGDCCQSKKSLPVLDQDLNCLPYS 109
             S+  + E     ++G       D  + +K   VL QDLNCLP S
Sbjct: 154 KPSKIYEEEQCSSSTEG---YYNSDLPKPRKL--VLKQDLNCLPDS 194