Jatropha Genome Database
- JcCA0294231.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0294231.20 - phase: 1 /partial
(259 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put... 327 4e-90
AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put... 327 4e-90
AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3); alpha... 117 8e-27
AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1); alpha... 98 6e-21
>AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
putative / starch debranching enzyme, putative |
chr1:813975-816623 FORWARD
Length = 882
Score = 327 bits (839), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/274 (59%), Positives = 201/274 (73%), Gaps = 18/274 (6%)
Query: 1 LVTLQRRLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSSDELASELCWNCGEEG 60
L L R+CGSGD+F+ G R F FN+I+RNSGL LVD+VSFS ELASEL WNCGEEG
Sbjct: 608 LSDLATRICGSGDVFTDG-RGPAFSFNYISRNSGLSLVDIVSFSGPELASELSWNCGEEG 666
Query: 61 PTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGSISYGDRKPFDWNSLST 120
TNK VL+RRLKQIRN+LFI Y+SLGVPVLNMGDECG S+ GS RKPFDWN L++
Sbjct: 667 ATNKSAVLQRRLKQIRNFLFIQYISLGVPVLNMGDECGISTRGSPLLESRKPFDWNLLAS 726
Query: 121 GFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDPSCKFLAMTLR 180
FG Q+TQFISF++S+R R SDV Q+R+FLK ENI WY DQ+ P+WEDP+ KFLA+ ++
Sbjct: 727 AFGTQITQFISFMTSVRARRSDVFQRRDFLKPENIVWYANDQTTPKWEDPASKFLALEIK 786
Query: 181 TK---------------SSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFF 225
++ S +LF+ FNA+D ESV+LP LP+G W RLVDTALPFPGFF
Sbjct: 787 SESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKWRRLVDTALPFPGFF 846
Query: 226 SNDGEPVV--EQMAELIVYGMKSHSCILFEARST 257
S +GE VV E + +L+VY MK +SC LFE +T
Sbjct: 847 SVEGETVVAEEPLQQLVVYEMKPYSCTLFETINT 880
>AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
putative / starch debranching enzyme, putative |
chr1:813975-816623 FORWARD
Length = 882
Score = 327 bits (839), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/274 (59%), Positives = 201/274 (73%), Gaps = 18/274 (6%)
Query: 1 LVTLQRRLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSSDELASELCWNCGEEG 60
L L R+CGSGD+F+ G R F FN+I+RNSGL LVD+VSFS ELASEL WNCGEEG
Sbjct: 608 LSDLATRICGSGDVFTDG-RGPAFSFNYISRNSGLSLVDIVSFSGPELASELSWNCGEEG 666
Query: 61 PTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGSISYGDRKPFDWNSLST 120
TNK VL+RRLKQIRN+LFI Y+SLGVPVLNMGDECG S+ GS RKPFDWN L++
Sbjct: 667 ATNKSAVLQRRLKQIRNFLFIQYISLGVPVLNMGDECGISTRGSPLLESRKPFDWNLLAS 726
Query: 121 GFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDPSCKFLAMTLR 180
FG Q+TQFISF++S+R R SDV Q+R+FLK ENI WY DQ+ P+WEDP+ KFLA+ ++
Sbjct: 727 AFGTQITQFISFMTSVRARRSDVFQRRDFLKPENIVWYANDQTTPKWEDPASKFLALEIK 786
Query: 181 TK---------------SSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFF 225
++ S +LF+ FNA+D ESV+LP LP+G W RLVDTALPFPGFF
Sbjct: 787 SESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKWRRLVDTALPFPGFF 846
Query: 226 SNDGEPVV--EQMAELIVYGMKSHSCILFEARST 257
S +GE VV E + +L+VY MK +SC LFE +T
Sbjct: 847 SVEGETVVAEEPLQQLVVYEMKPYSCTLFETINT 880
>AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3);
alpha-amylase/ isoamylase | chr4:5784099-5788839 FORWARD
Length = 764
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 123/266 (46%), Gaps = 30/266 (11%)
Query: 7 RLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFS-----------SDELASELCWN 55
R+ GS D++ R NF+ + G L DLVS++ +D WN
Sbjct: 512 RVSGSSDLYQVNQRKPYHGVNFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGCNDNHSWN 571
Query: 56 CGEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSS-GGSISYGDRKP-- 112
CG EG T + R +Q++N+ L +S G P++ MGDE G + G + SYG
Sbjct: 572 CGFEGETGDAHIKSLRTRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTSLN 631
Query: 113 -FDWNSLSTGFGIQMTQFISFLSSLRTRWS-DVLQKRNFLKEENIDWYGTDQSPPRWEDP 170
F W L + F F ++ R S VL+ NFL + I W+ + W++
Sbjct: 632 NFQWKELDAK---KQNHFRFFSEVIKFRHSHHVLKHENFLTQGEITWHEDN-----WDNS 683
Query: 171 SCKFLAMTLRTKSSG-NLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSNDG 229
KFLA TL G ++++AFNA D ++PQ P G W R+ DT L P F +G
Sbjct: 684 ESKFLAFTLHDGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLESPDDFVREG 743
Query: 230 EPVVEQMAELIVYGMKSHSCILFEAR 255
V +A+ Y + S IL +++
Sbjct: 744 ---VAGVAD--TYNVAPFSSILLQSK 764
>AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1);
alpha-amylase/ isoamylase | chr2:16666078-16672183
FORWARD
Length = 783
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 20/230 (8%)
Query: 8 LCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSS-----------DELASELCWNC 56
LCGS +++ G R NFI + G L DLV++++ D WNC
Sbjct: 514 LCGSPNLYQGG-RKPWHSINFICAHDGFTLADLVTYNNKNNLANGEENNDGENHNYSWNC 572
Query: 57 GEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGS----ISYGDRKP 112
GEEG I V R +Q+RN+ L VS GVP++ MGDE G + GG+
Sbjct: 573 GEEGDFASISVKRLRKRQMRNFFVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYMNY 632
Query: 113 FDWNSLSTGFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDPSC 172
F W+ +F L R + L +F + + W+G P W + S
Sbjct: 633 FRWDKKEEAHS-DFFRFCRILIKFRDE-CESLGLNDFPTAKRLQWHGLAPEIPNWSETS- 689
Query: 173 KFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFP 222
+F+A +L +++AFN + + V LP P G W VDT+ P P
Sbjct: 690 RFVAFSLVDSVKKEIYVAFNTSHLATLVSLPNRP-GYRWEPFVDTSKPSP 738