Jatropha Genome Database

JcCA0294231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.10 + phase: 0 
         (257 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48120.1 | Symbols: PAC | PAC (PALE CRESS) | chr2:19679870-19...   306   1e-83
AT2G48120.2 | Symbols: PAC | PAC (PALE CRESS) | chr2:19679870-19...   298   2e-81

>AT2G48120.1 | Symbols: PAC | PAC (PALE CRESS) |
           chr2:19679870-19681351 FORWARD
          Length = 313

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/252 (62%), Positives = 186/252 (73%), Gaps = 4/252 (1%)

Query: 10  EWQAEQRKKSKXXXXXXXXXXXXXXXXXXXXXXXGLRLKGYPEEDVKKARKLVSSFIRXX 69
           EWQA QR+K+K                       G RLK +PE+D++KARKLVSSFIR  
Sbjct: 62  EWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAA 121

Query: 70  XXXXXXXXXXXXXXXLNELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVEMEILKREAT 129
                          L+ELVLM+IWNRLDLARRDDEKDA+RSLDLLYRRVE EILKR+A+
Sbjct: 122 EEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQAS 181

Query: 130 PAMRLLNDLLNMHDGFDDEGWLKECKKCMIDTFPREDPFSILVPAGFDIDKHQGPLQPPL 189
           PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPFSIL+P GFDID HQG L+PP+
Sbjct: 182 PAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGQLRPPI 241

Query: 190 --EADDVLLRVDFVREVDALLQEVRHE--PSEEQNIEGFDPESVASKLKQQEKQRTIRKV 245
             E D+ LLRVDFVREVDALLQEVR E   +     EG DPE++A K KQQEKQRTIR++
Sbjct: 242 ETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTIRQI 301

Query: 246 EALLDLAINLKW 257
           EA+LDLA+NLKW
Sbjct: 302 EAILDLALNLKW 313


>AT2G48120.2 | Symbols: PAC | PAC (PALE CRESS) |
           chr2:19679870-19681351 FORWARD
          Length = 307

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/218 (68%), Positives = 176/218 (80%), Gaps = 4/218 (1%)

Query: 44  GLRLKGYPEEDVKKARKLVSSFIRXXXXXXXXXXXXXXXXXLNELVLMVIWNRLDLARRD 103
           G RLK +PE+D++KARKLVSSFIR                 L+ELVLM+IWNRLDLARRD
Sbjct: 90  GTRLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRD 149

Query: 104 DEKDAVRSLDLLYRRVEMEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKCMIDTFP 163
           DEKDA+RSLDLLYRRVE EILKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFP
Sbjct: 150 DEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFP 209

Query: 164 REDPFSILVPAGFDIDKHQGPLQPPL--EADDVLLRVDFVREVDALLQEVRHE--PSEEQ 219
           REDPFSIL+P GFDID HQG L+PP+  E D+ LLRVDFVREVDALLQEVR E   +   
Sbjct: 210 REDPFSILMPPGFDIDMHQGQLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGS 269

Query: 220 NIEGFDPESVASKLKQQEKQRTIRKVEALLDLAINLKW 257
             EG DPE++A K KQQEKQRTIR++EA+LDLA+NLKW
Sbjct: 270 KGEGLDPEAIALKFKQQEKQRTIRQIEAILDLALNLKW 307