Jatropha Genome Database

JcCA0294151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294151.20 - phase: 2 /partial
         (64 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protei...    82   1e-16
AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protei...    82   1e-16
AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protei...    80   3e-16

>AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 2   EVGIQELPKNSALGRLRGSDNVLEIYSRCYNEQPLVIQXXXXXXXXXXXXVLADILDIQD 61
           +VGI+E+ K+S LGRLRGSDN++EIYSRCY EQPLVIQ            VLADI+D+QD
Sbjct: 316 QVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQD 375

Query: 62  LF 63
           LF
Sbjct: 376 LF 377


>AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 376

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 2   EVGIQELPKNSALGRLRGSDNVLEIYSRCYNEQPLVIQXXXXXXXXXXXXVLADILDIQD 61
           +VGI+E+ K+S LGRLRGSDN++EIYSRCY EQPLVIQ            VLADI+D+QD
Sbjct: 314 QVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQD 373

Query: 62  LF 63
           LF
Sbjct: 374 LF 375


>AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query: 2   EVGIQELPKNSALGRLRGSDNVLEIYSRCYNEQPLVIQXXXXXXXXXXXXVLADILDIQD 61
           +VGI+E+ K+S LGRLRGSDN+++IYSRCY EQPLVIQ            VLADI+D+QD
Sbjct: 316 QVGIREVSKDSPLGRLRGSDNIVKIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQD 375

Query: 62  LF 63
           LF
Sbjct: 376 LF 377