Jatropha Genome Database

JcCA0293801.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293801.20 + phase: 0 
         (145 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10710.2 | Symbols:  | Computational predictions suggested th...    95   2e-20
AT1G10710.1 | Symbols:  | Computational predictions suggested th...    94   3e-20

>AT1G10710.2 | Symbols:  | Computational predictions suggested the
           presence of a small cysteine-rich protein downstream of
           this gene model (Silverstein 2007), but subsequent
           analysis revealed that this region contains a tenth exon
           for the At1g10710 gene which is depicted in the
           At1g10710.1 gene model. | chr1:3558423-3560407 FORWARD
          Length = 349

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 1   MAGNQPLQNSKRGILEPVKEL--WQIHYSRFFSFPRLSSTCAILKPLSSRCIKKNPHGLH 58
           MAG+    N +R   E   E+  W I ++RF  +P   S   +LKPL  R   +  H  H
Sbjct: 1   MAGSLTASNRRRNA-EDSSEIYRWTIGFARFVHYPSSPSPHPVLKPLGKR---EQYHSPH 56

Query: 59  GKWVS-SSSMASLHLKNDYADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECPIR 117
           G W+S SSS  SLH+  D  +    +L V    KV EEH+I+KLNF+WPQ+SC+   P R
Sbjct: 57  GTWLSASSSTVSLHIV-DELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSR 115

Query: 118 GSRVVFASYRDSLGQ 132
           GSR +F +Y DS  Q
Sbjct: 116 GSRAIFVTYMDSANQ 130


>AT1G10710.1 | Symbols:  | Computational predictions suggested the
           presence of a small cysteine-rich protein beginning in
           intron 9 (Silverstein 2007), but subsequent analysis
           revealed that this region contains a tenth exon for the
           At1g10710 gene. | chr1:3558423-3561495 FORWARD
          Length = 410

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 1   MAGNQPLQNSKRGILEPVKEL--WQIHYSRFFSFPRLSSTCAILKPLSSRCIKKNPHGLH 58
           MAG+    N +R   E   E+  W I ++RF  +P   S   +LKPL  R   +  H  H
Sbjct: 1   MAGSLTASNRRRNA-EDSSEIYRWTIGFARFVHYPSSPSPHPVLKPLGKR---EQYHSPH 56

Query: 59  GKWVS-SSSMASLHLKNDYADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECPIR 117
           G W+S SSS  SLH+  D  +    +L V    KV EEH+I+KLNF+WPQ+SC+   P R
Sbjct: 57  GTWLSASSSTVSLHIV-DELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSR 115

Query: 118 GSRVVFASYRDSLGQ 132
           GSR +F +Y DS  Q
Sbjct: 116 GSRAIFVTYMDSANQ 130