Jatropha Genome Database

JcCA0293541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293541.10 - phase: 0 /partial
         (317 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20810.1 | Symbols:  | transcription factor jumonji (jmjC) do...   405   e-113
AT3G20810.3 | Symbols:  | transcription factor jumonji (jmjC) do...   404   e-113
AT3G20810.2 | Symbols:  | transcription factor jumonji (jmjC) do...   397   e-111
AT5G19840.1 | Symbols:  | transcription factor jumonji (jmjC) do...    52   6e-07

>AT3G20810.1 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278144 FORWARD
          Length = 418

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 231/322 (71%), Gaps = 6/322 (1%)

Query: 2   SAAAAVNDH----LYTPILDAESSVLLQSISSHGGYAYVSMATLAASGDFXXXXXXXXXX 57
           +  A+  DH    L TP LDAES  LLQSIS+ GGYAY  MA LA +GD           
Sbjct: 4   ATTASSGDHNNLRLPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMA 63

Query: 58  WEQLHSGPWHSVLPVWRDAYSMACLYVAKFHYRNAEFKDALRVLDXXXXXXXXXXRKDLD 117
           WEQLHSGPWHSVLPVWRDAYSMACL+VAK H+   EF +AL  LD          RKDL 
Sbjct: 64  WEQLHSGPWHSVLPVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLH 123

Query: 118 SAVETVTAKARE--NGGQSLGFDKSDRKLVRETEFDKAEALRLLPMKSLSCKIVVKRSAL 175
            +V  V+++AR+     +    D    +LV E   D  E L++LP +SL+CK V KRS L
Sbjct: 124 DSVLLVSSEARKMTKSLEEASGDFKGERLVPEVPVDVNEVLKILPCRSLTCKRVEKRSGL 183

Query: 176 SLEAFLREHLLSSSPVIISDCMAHWPARIKWNDVDYLKRVAGDRTVPVEVGKTYLCQEWK 235
           SLE FLR++ L  +PV+I++ MAHWPAR KWN +DYL  VAG+RTVPVEVGK YLC +WK
Sbjct: 184 SLEGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWK 243

Query: 236 QELITFSQFLERIQPNNSLSAVPTYLAQHPLFDQINELRNDICVPDYCFAGGGELRSLNA 295
           QEL+TFS+FLER++ N S    PTYLAQHPLFDQINELR+DIC+PDYCF GGGEL+SLNA
Sbjct: 244 QELVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNA 303

Query: 296 WFGPAGTVTPLHHDPHHNILAQ 317
           WFGPAGTVTPLHHDPHHNILAQ
Sbjct: 304 WFGPAGTVTPLHHDPHHNILAQ 325


>AT3G20810.3 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278182 FORWARD
          Length = 398

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 231/322 (71%), Gaps = 6/322 (1%)

Query: 2   SAAAAVNDH----LYTPILDAESSVLLQSISSHGGYAYVSMATLAASGDFXXXXXXXXXX 57
           +  A+  DH    L TP LDAES  LLQSIS+ GGYAY  MA LA +GD           
Sbjct: 4   ATTASSGDHNNLRLPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMA 63

Query: 58  WEQLHSGPWHSVLPVWRDAYSMACLYVAKFHYRNAEFKDALRVLDXXXXXXXXXXRKDLD 117
           WEQLHSGPWHSVLPVWRDAYSMACL+VAK H+   EF +AL  LD          RKDL 
Sbjct: 64  WEQLHSGPWHSVLPVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLH 123

Query: 118 SAVETVTAKARE--NGGQSLGFDKSDRKLVRETEFDKAEALRLLPMKSLSCKIVVKRSAL 175
            +V  V+++AR+     +    D    +LV E   D  E L++LP +SL+CK V KRS L
Sbjct: 124 DSVLLVSSEARKMTKSLEEASGDFKGERLVPEVPVDVNEVLKILPCRSLTCKRVEKRSGL 183

Query: 176 SLEAFLREHLLSSSPVIISDCMAHWPARIKWNDVDYLKRVAGDRTVPVEVGKTYLCQEWK 235
           SLE FLR++ L  +PV+I++ MAHWPAR KWN +DYL  VAG+RTVPVEVGK YLC +WK
Sbjct: 184 SLEGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWK 243

Query: 236 QELITFSQFLERIQPNNSLSAVPTYLAQHPLFDQINELRNDICVPDYCFAGGGELRSLNA 295
           QEL+TFS+FLER++ N S    PTYLAQHPLFDQINELR+DIC+PDYCF GGGEL+SLNA
Sbjct: 244 QELVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNA 303

Query: 296 WFGPAGTVTPLHHDPHHNILAQ 317
           WFGPAGTVTPLHHDPHHNILAQ
Sbjct: 304 WFGPAGTVTPLHHDPHHNILAQ 325


>AT3G20810.2 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278144 FORWARD
          Length = 429

 Score =  397 bits (1019), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/333 (59%), Positives = 231/333 (69%), Gaps = 17/333 (5%)

Query: 2   SAAAAVNDH----LYTPILDAESSVLLQSISSHGGYAYVSMATLAASGDFXXXXXXXXXX 57
           +  A+  DH    L TP LDAES  LLQSIS+ GGYAY  MA LA +GD           
Sbjct: 4   ATTASSGDHNNLRLPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMA 63

Query: 58  WEQLHSGPWHSVLPVWRDAYSMACLYVAKFHYRNAEFKDALRVLDXXXXXXXXXXRKDLD 117
           WEQLHSGPWHSVLPVWRDAYSMACL+VAK H+   EF +AL  LD          RKDL 
Sbjct: 64  WEQLHSGPWHSVLPVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLH 123

Query: 118 SAVETVTAKARE--NGGQSLGFDKSDRKLVRETEFDKAEA-----------LRLLPMKSL 164
            +V  V+++AR+     +    D    +LV E   D  E            L++LP +SL
Sbjct: 124 DSVLLVSSEARKMTKSLEEASGDFKGERLVPEVPVDVNEVRHVLANLQLLVLKILPCRSL 183

Query: 165 SCKIVVKRSALSLEAFLREHLLSSSPVIISDCMAHWPARIKWNDVDYLKRVAGDRTVPVE 224
           +CK V KRS LSLE FLR++ L  +PV+I++ MAHWPAR KWN +DYL  VAG+RTVPVE
Sbjct: 184 TCKRVEKRSGLSLEGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVE 243

Query: 225 VGKTYLCQEWKQELITFSQFLERIQPNNSLSAVPTYLAQHPLFDQINELRNDICVPDYCF 284
           VGK YLC +WKQEL+TFS+FLER++ N S    PTYLAQHPLFDQINELR+DIC+PDYCF
Sbjct: 244 VGKNYLCSDWKQELVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCF 303

Query: 285 AGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQ 317
            GGGEL+SLNAWFGPAGTVTPLHHDPHHNILAQ
Sbjct: 304 VGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQ 336


>AT5G19840.1 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr5:6705372-6709382 FORWARD
          Length = 505

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 45/188 (23%)

Query: 168 IVVKRSALSLEAFLREHLLSSSPVIISDCMAHWPARIKWN----DVDYLKRVAGD----- 218
           I    +AL+   F     L++ P +   C + W A  KWN     +DYL+  AG      
Sbjct: 10  IKTFENALTAADFESTVELTNFPAVFRGCASVWDAYSKWNPFNSGLDYLEERAGSVEVEA 69

Query: 219 ---RTVPVEVGKTYLCQEWKQELITFSQFL----ERIQPNNSLSAVPT------------ 259
              RT PV  G     +  ++  + FS F+    + ++   + S V              
Sbjct: 70  MLSRTAPVFNGD---IRSHERVSLPFSDFIRFCKQHMRGKGNGSGVDAKSADLNPMCEDY 126

Query: 260 -----YLAQHPLFDQINE-------LRNDICVPDYCFAGGGELRSLNAWFGPAGTVTPLH 307
                YLAQ P+ +   E       LR DI  P   F     L S+N W   A   +  H
Sbjct: 127 RPGQIYLAQFPILNDEKEEKVLLKILRQDIQTP--TFLDAKSLSSINFWMNSAEARSSTH 184

Query: 308 HDPHHNIL 315
           +DPHHN+L
Sbjct: 185 YDPHHNLL 192