Jatropha Genome Database
- JcCA0293441.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0293441.20 - phase: 0 /TE/partial
(369 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 454 e-128
AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 439 e-123
AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11)... 430 e-121
AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11)... 430 e-121
AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11)... 430 e-121
AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA helic... 259 2e-69
AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 248 4e-66
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 244 5e-65
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 244 5e-65
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 244 5e-65
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 244 5e-65
AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20)... 235 4e-62
AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 232 4e-61
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 214 1e-55
AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 212 3e-55
AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 209 3e-54
AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative | chr1... 206 2e-53
AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 206 3e-53
AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR... 205 4e-53
AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 205 4e-53
AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA helic... 190 1e-48
AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA h... 184 8e-47
AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIA... 182 4e-46
AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 181 4e-46
AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 181 4e-46
AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 174 6e-44
AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 171 8e-43
AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 155 3e-38
AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 155 4e-38
AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10... 154 9e-38
AT3G19760.1 | Symbols: | eukaryotic translation initiation fact... 151 5e-37
AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein ... 149 2e-36
AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein ... 149 2e-36
AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein ... 149 4e-36
AT1G51380.1 | Symbols: | eukaryotic translation initiation fact... 146 2e-35
AT1G72730.1 | Symbols: | eukaryotic translation initiation fact... 143 2e-34
AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28... 141 7e-34
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 140 1e-33
AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase... 140 1e-33
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 140 2e-33
AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 139 4e-33
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 138 5e-33
AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 135 3e-32
AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 135 3e-32
AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/ ... 135 4e-32
AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18... 132 4e-31
AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) | chr5:27... 131 6e-31
AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 131 7e-31
AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 130 1e-30
AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 130 1e-30
AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/ DE... 130 2e-30
AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 130 2e-30
AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative | chr5... 130 2e-30
AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 129 2e-30
AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 128 7e-30
AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 128 7e-30
AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE SU... 125 3e-29
AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative | chr... 124 7e-29
AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 123 2e-28
AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 120 1e-27
AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 117 1e-26
AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALL... 115 6e-26
AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 114 9e-26
AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 107 9e-24
AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 104 7e-23
AT4G15850.1 | Symbols: ATRH1 | ATRH1; ATP-dependent helicase/ DE... 101 7e-22
AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17... 101 1e-21
AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586)... 99 6e-21
AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 94 1e-19
AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 90 2e-18
AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 86 3e-17
AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 81 8e-16
AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 81 1e-15
AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22... 79 5e-15
AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16... 73 2e-13
AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |... 52 9e-07
>AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:21657099-21660352 FORWARD
Length = 646
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/272 (79%), Positives = 240/272 (88%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE+GVDILVATPGRL D++ERGRVSL MV++LALDEADRMLDMGFEPQIRKIVQQMD
Sbjct: 268 IRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMD 327
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
MPPPG RQTMLFSATFP EIQ LASDFLS+YIFL VGRVGSSTDLI QRVE V D DKR+
Sbjct: 328 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRS 387
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
HLM+LLHAQ+ +GN GK+ALTLVFVETK+GAD+LE+WL +GFPA IHGD+ Q ERE A
Sbjct: 388 HLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVA 447
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
L+SFK G TPILVATDVA+RGLDIPHV+HVVNFDLP DIDDYVHRIGRTGRAG SGLATA
Sbjct: 448 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATA 507
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF+D N +AK L ELM+E NQEVP WL++YA
Sbjct: 508 FFNDNNTTMAKPLAELMQEANQEVPDWLTRYA 539
>AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:17705382-17708744 FORWARD
Length = 633
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/272 (76%), Positives = 239/272 (87%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE+GVDILVATPGRL D++ER RVS+ M+++LALDEADRMLDMGFEPQIRKIV+QMD
Sbjct: 281 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 340
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
MPP G RQT+LFSATFP EIQ LA+DFL++YIFL VGRVGSSTDLI QRVE V D DKR+
Sbjct: 341 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRS 400
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
HLM+LLHAQ+ +G GK+ALTLVFVETKRGAD+LE+WL +GFPA +IHGD+ Q ERE A
Sbjct: 401 HLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVA 460
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
LK+FK G TPILVATDVA+RGLDIPHV+HVVNFDLP DIDDYVHRIGRTGRAGKSGLATA
Sbjct: 461 LKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATA 520
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF+D N LA+ L ELM+E NQEVP WL++YA
Sbjct: 521 FFNDGNTSLARPLAELMQEANQEVPEWLTRYA 552
>AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/300 (69%), Positives = 245/300 (81%), Gaps = 6/300 (2%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE+G DILVATPGRL D++ER RVS+ M+++LALDEADRMLDMGFEPQIRKIV+QMD
Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
MPP G RQTMLFSATFP +IQ LA+DF+S+YIFL VGRVGSSTDLI QRVE VQ+ DKR+
Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRS 392
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
HLM+LLHAQ+ + + K++LTLVFVETKRGAD LE+WL + FPA +IHGD+ Q ERE A
Sbjct: 393 HLMDLLHAQRETQD--KQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVA 450
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
L+SFK G TPILVATDVA+RGLDIPHV+HVVNFDLP DIDDYVHRIGRTGRAGKSG+ATA
Sbjct: 451 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATA 510
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAENXXXXXXXXXXXXXXXNKFGGYDYRNE 300
FF++ N LA++L ELM+E NQEVP WL++YA +FGG D+R E
Sbjct: 511 FFNENNAQLARSLAELMQEANQEVPEWLTRYASR----ASFGGGKKRSGGRFGGRDFRRE 566
>AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/300 (69%), Positives = 245/300 (81%), Gaps = 6/300 (2%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE+G DILVATPGRL D++ER RVS+ M+++LALDEADRMLDMGFEPQIRKIV+QMD
Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
MPP G RQTMLFSATFP +IQ LA+DF+S+YIFL VGRVGSSTDLI QRVE VQ+ DKR+
Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRS 392
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
HLM+LLHAQ+ + + K++LTLVFVETKRGAD LE+WL + FPA +IHGD+ Q ERE A
Sbjct: 393 HLMDLLHAQRETQD--KQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVA 450
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
L+SFK G TPILVATDVA+RGLDIPHV+HVVNFDLP DIDDYVHRIGRTGRAGKSG+ATA
Sbjct: 451 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATA 510
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAENXXXXXXXXXXXXXXXNKFGGYDYRNE 300
FF++ N LA++L ELM+E NQEVP WL++YA +FGG D+R E
Sbjct: 511 FFNENNAQLARSLAELMQEANQEVPEWLTRYASR----ASFGGGKKRSGGRFGGRDFRRE 566
>AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/300 (69%), Positives = 245/300 (81%), Gaps = 6/300 (2%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE+G DILVATPGRL D++ER RVS+ M+++LALDEADRMLDMGFEPQIRKIV+QMD
Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
MPP G RQTMLFSATFP +IQ LA+DF+S+YIFL VGRVGSSTDLI QRVE VQ+ DKR+
Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRS 392
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
HLM+LLHAQ+ + + K++LTLVFVETKRGAD LE+WL + FPA +IHGD+ Q ERE A
Sbjct: 393 HLMDLLHAQRETQD--KQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVA 450
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
L+SFK G TPILVATDVA+RGLDIPHV+HVVNFDLP DIDDYVHRIGRTGRAGKSG+ATA
Sbjct: 451 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATA 510
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAENXXXXXXXXXXXXXXXNKFGGYDYRNE 300
FF++ N LA++L ELM+E NQEVP WL++YA +FGG D+R E
Sbjct: 511 FFNENNAQLARSLAELMQEANQEVPEWLTRYASR----ASFGGGKKRSGGRFGGRDFRRE 566
>AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25318967-25322071
REVERSE
Length = 591
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/274 (50%), Positives = 181/274 (66%), Gaps = 19/274 (6%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+L +GV+I++ATPGRL+DM+E +L V YL LDEADRMLDMGFEPQIRKIV Q+
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 341
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDL-----IAQRVELVQD 115
+RQT+L+SAT+P E+++LA FL D +G STDL I Q +E+V
Sbjct: 342 ----PDRQTLLWSATWPREVETLARQFLRDPYKAIIG----STDLKANQSINQVIEIVPT 393
Query: 116 VDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQV 175
+K N L+ LL Q G+ L+FVETKRG D + L G+PA+AIHGDK Q
Sbjct: 394 PEKYNRLLTLLK-QLMDGSK-----ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQS 447
Query: 176 ERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKS 235
ER+R L FK G +PI+ ATDVA+RGLD+ + VVN+D P ++DY+HRIGRTGRAG
Sbjct: 448 ERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAK 507
Query: 236 GLATAFFSDKNIPLAKALVELMKEVNQEVPSWLS 269
G+A FF+ N A+ LV++++E Q VP LS
Sbjct: 508 GMAFTFFTHDNAKFARELVKILQEAGQVVPPTLS 541
>AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding / protein binding |
chr5:4711271-4714713 FORWARD
Length = 712
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 183/274 (66%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
+ +E+GVDI+VATPGRL D++E R+SL V YL LDEADRMLDMGFEPQIRKIV ++
Sbjct: 345 LKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV- 403
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGS--STDLIAQRVELVQDVDK 118
P +RQT++++AT+P E++ +A+D L + + +G V + I Q +E++ ++K
Sbjct: 404 ---PTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEK 460
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L ++L +Q+ ++F TKR D L L+R+ F A AIHGDK Q ER+
Sbjct: 461 HSRLEQILRSQEPGSK------IIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERD 513
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G TP+LVATDVA+RGLD+ + VVN+D P ++DYVHRIGRTGRAG +GLA
Sbjct: 514 DVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF D++ A L+++++ NQ+VP + + A
Sbjct: 574 YTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 607
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+LE+G DI+VATPGRL D++E R+SL + YL LDEADRMLDMGFEPQIRKIV+++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI- 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGS--STDLIAQRVELVQDVDK 118
P +RQT++++AT+P ++ +A+D L + + +G V + I Q +E+V ++K
Sbjct: 333 ---PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK 389
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L ++L +Q+ ++F TKR D L L+R F A AIHGDK Q ER+
Sbjct: 390 QRRLEQILRSQEPGSK------VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERD 442
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G TP+LVATDVA+RGLD+ + VVN+D P ++DYVHRIGRTGRAG +G A
Sbjct: 443 NVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF D++ A L+++++ NQ VP + + A
Sbjct: 503 FTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+LE+G DI+VATPGRL D++E R+SL + YL LDEADRMLDMGFEPQIRKIV+++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI- 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGS--STDLIAQRVELVQDVDK 118
P +RQT++++AT+P ++ +A+D L + + +G V + I Q +E+V ++K
Sbjct: 333 ---PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK 389
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L ++L +Q+ ++F TKR D L L+R F A AIHGDK Q ER+
Sbjct: 390 QRRLEQILRSQEPGSK------VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERD 442
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G TP+LVATDVA+RGLD+ + VVN+D P ++DYVHRIGRTGRAG +G A
Sbjct: 443 NVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF D++ A L+++++ NQ VP + + A
Sbjct: 503 FTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+LE+G DI+VATPGRL D++E R+SL + YL LDEADRMLDMGFEPQIRKIV+++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI- 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGS--STDLIAQRVELVQDVDK 118
P +RQT++++AT+P ++ +A+D L + + +G V + I Q +E+V ++K
Sbjct: 333 ---PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK 389
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L ++L +Q+ ++F TKR D L L+R F A AIHGDK Q ER+
Sbjct: 390 QRRLEQILRSQEPGSK------VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERD 442
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G TP+LVATDVA+RGLD+ + VVN+D P ++DYVHRIGRTGRAG +G A
Sbjct: 443 NVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF D++ A L+++++ NQ VP + + A
Sbjct: 503 FTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 618
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+LE+G DI+VATPGRL D++E R+SL + YL LDEADRMLDMGFEPQIRKIV+++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI- 332
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGS--STDLIAQRVELVQDVDK 118
P +RQT++++AT+P ++ +A+D L + + +G V + I Q +E+V ++K
Sbjct: 333 ---PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK 389
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L ++L +Q+ ++F TKR D L L+R F A AIHGDK Q ER+
Sbjct: 390 QRRLEQILRSQEPGSK------VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERD 442
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G TP+LVATDVA+RGLD+ + VVN+D P ++DYVHRIGRTGRAG +G A
Sbjct: 443 NVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF D++ A L+++++ NQ VP + + A
Sbjct: 503 FTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20) |
chr1:20574634-20577141 FORWARD
Length = 501
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 175/268 (65%), Gaps = 19/268 (7%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R+L+KGV+I++ATPGRL+DM+E +L V YL LDEADRMLDMGF+PQIRKIV +
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR- 275
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQR-----VELVQDV 116
+RQT+ +SAT+P E++ L+ FL + + +G S+DL A R V+++ +
Sbjct: 276 ---PDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIG----SSDLKANRAIRQIVDVISES 328
Query: 117 DKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVE 176
K N L++LL G R LVF++TK+G D + L G+PA++IHGDK Q E
Sbjct: 329 QKYNKLVKLLE----DIMDGSR--ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 382
Query: 177 RERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSG 236
R+ L F+ G +PI+ ATDVA+RGLD+ V +V+N+D P ++DYVHRIGRTGRAG G
Sbjct: 383 RDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
Query: 237 LATAFFSDKNIPLAKALVELMKEVNQEV 264
A FF+ N AK L +++E Q+V
Sbjct: 443 TAYTFFTVANARFAKELTNILQEAGQKV 470
>AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1088
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 178/274 (64%), Gaps = 13/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
+ LE+G DI+VATPGRL D++E + V L LDEADRMLDMGFEPQIRKIV ++
Sbjct: 551 LKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEI- 609
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVG--SSTDLIAQRVELVQDVDK 118
P RQT++++AT+P E++ +ASD L + + + +GRV ++ I Q VE+V ++K
Sbjct: 610 ---PPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEK 666
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
L ++L +Q+ + + ++F TKR D L + R F A+ IHGDK Q ER+
Sbjct: 667 ERRLEQILRSQE------RGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERD 719
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L F+ G + +L+ATDVA+RGLDI + V+N+D P ++DYVHRIGRTGRAG +G+A
Sbjct: 720 WVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVA 779
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
FF++++ A L+++++ NQ+VP + A
Sbjct: 780 FTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD
Length = 591
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 168/268 (62%), Gaps = 13/268 (4%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
+++GV I+VATPGRL DM+ + ++SL +YL LDEADR++D+GFE IR++
Sbjct: 275 VKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFK--- 331
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
+RQT+LFSAT P +IQ A L + + VGR G++ + Q VE V+ K +L+
Sbjct: 332 -SQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 390
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKS 183
E L QK S L+F E K D + +L G A+AIHG K Q +RE A+ S
Sbjct: 391 ECL--QKTSPP------VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 442
Query: 184 FKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
FK G +LVATDVAS+GLD P + HV+N+D+P +I++YVHRIGRTGR GK+G+AT F +
Sbjct: 443 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
Query: 244 -DKNIPLAKALVELMKEVNQEVPSWLSQ 270
+++ L L++E Q +P L++
Sbjct: 503 KNQSETTLLDLKHLLQEAKQRIPPVLAE 530
>AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:19429083-19431617 REVERSE
Length = 760
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 166/274 (60%), Gaps = 12/274 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
F+ L+ G +I+VATPGRL+DM++ +++ YL LDEADRM D+GFEPQ+R IV Q+
Sbjct: 345 FKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR 404
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELV-QDVDKR 119
+RQT+LFSAT P +++ LA + LSD I +TVG VG + + I Q V ++ D +K
Sbjct: 405 ----PDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKL 460
Query: 120 NHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
L+E L G+ LVF K D +E L+ + F A+HGDK Q R
Sbjct: 461 PWLLEKLPGMIDEGD------VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRME 514
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAG-KSGLA 238
L+ FK GV +L+ATDVA+RGLDI + VVN+D+ KD+D +VHRIGRTGRAG + G+A
Sbjct: 515 TLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVA 574
Query: 239 TAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYA 272
+ + A LV + Q VP L+ A
Sbjct: 575 YTLVTQREARFAGELVNSLVAAGQNVPPELTDLA 608
>AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:14265679-14267880 REVERSE
Length = 733
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 174/282 (61%), Gaps = 20/282 (7%)
Query: 3 NLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQM--- 59
+ +G +I++ATPGRL+D +ER L Y+ LDEADRM+DMGFEPQ+ ++ M
Sbjct: 435 KITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 494
Query: 60 DMPPPGE----------RQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQR 109
++ P E R T +FSAT P ++ LA +L + + +T+G G +TDLI+Q
Sbjct: 495 NLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQH 554
Query: 110 VELVQDVDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIH 169
V ++++ +K L +LL G++ +VFV TK+ D++ L ++G+ +H
Sbjct: 555 VIMMKESEKFFRLQKLLD------ELGEKT-AIVFVNTKKNCDSIAKNLDKAGYRVTTLH 607
Query: 170 GDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRT 229
G K Q +RE +L+ F+ +LVATDV RG+DIP V+HV+N+D+PK I+ Y HRIGRT
Sbjct: 608 GGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRT 667
Query: 230 GRAGKSGLATAFFSDKNIPLAKALVELMKEVNQEVPSWLSQY 271
GRAGKSG+AT+F + + + L +++ + N VP L+++
Sbjct: 668 GRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARH 709
>AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative |
chr1:7286356-7288842 FORWARD
Length = 828
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 167/273 (61%), Gaps = 13/273 (4%)
Query: 4 LEKGVDILVATPGRLVDMI--ERGRVS-LGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
L++G +I+V TPGR++D++ G+++ L V +L +DEADRM DMGFEPQI +I+Q +
Sbjct: 311 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 370
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
ERQT+LFSATFP ++++LA L+ + + VG I Q VE+ + D+
Sbjct: 371 ----PERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 426
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
L+ELL G ++ LVFV+++ DAL + +S +P +++HG K Q +RE
Sbjct: 427 RLLELL------GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDREST 480
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
+ FK V +L+AT VA+RGLD+ + VVNFD P +DYVHR+GRTGRAG+ G A
Sbjct: 481 ISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 540
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAE 273
F S+ + A LV+ ++ Q VP L A+
Sbjct: 541 FISEDDAKYAPDLVKALELSEQPVPDDLKALAD 573
>AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:7285342-7288842 FORWARD
Length = 1166
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 168/273 (61%), Gaps = 13/273 (4%)
Query: 4 LEKGVDILVATPGRLVDMI--ERGRVS-LGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
L++G +I+V TPGR++D++ G+++ L V +L +DEADRM DMGFEPQI +I+Q +
Sbjct: 649 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI- 707
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
P ERQT+LFSATFP ++++LA L+ + + VG I Q VE+ + D+
Sbjct: 708 RP---ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 764
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
L+ELL G ++ LVFV+++ DAL + +S +P +++HG K Q +RE
Sbjct: 765 RLLELL------GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDREST 818
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
+ FK V +L+AT VA+RGLD+ + VVNFD P +DYVHR+GRTGRAG+ G A
Sbjct: 819 ISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 878
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAE 273
F S+ + A LV+ ++ Q VP L A+
Sbjct: 879 FISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
>AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR
1); ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding | chr1:11479921-11482707 FORWARD
Length = 537
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 168/270 (62%), Gaps = 10/270 (3%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
+ GVDI++ TPGRL D+IE + L V ++ LDEADRMLDMGFE +R I+ +
Sbjct: 238 IRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKV- 296
Query: 64 PGERQTMLFSATFPHEIQSLASDFLS-DYIFLTVGRVGSSTDL-IAQRVELVQDVDKRNH 121
RQ ++FSAT+P ++ LA +F+ + I + +G V + + + Q +E++ + +
Sbjct: 297 ---RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQR 353
Query: 122 LMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERAL 181
L+ LL S ++ LVF K A+ LE +L + G+ A++IHG+K Q ER R+L
Sbjct: 354 LIALLEKYHKS----QKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSL 409
Query: 182 KSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAF 241
FK G P+LVATDVA+RGLDIP V V+N+ P +DYVHRIGRTGRAGK G+A F
Sbjct: 410 SLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469
Query: 242 FSDKNIPLAKALVELMKEVNQEVPSWLSQY 271
F+ N LA LV +++E Q VP+ L ++
Sbjct: 470 FTPLNKGLAGELVNVLREAGQVVPADLLKF 499
>AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr4:16069669-16071405 REVERSE
Length = 542
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 164/268 (61%), Gaps = 13/268 (4%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
++KGV I+VATPGRL D++ + ++SL + L LDEADR++D+GFE IR +
Sbjct: 226 VKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFK--- 282
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
+RQT+LFSAT P +IQ A+ L + + VGR G++ + Q VE V+ K +L+
Sbjct: 283 -SQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 341
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKS 183
E L QK + L+F E K D + +L G A+AIHG K Q +R+ A+
Sbjct: 342 ECL--QKTTPP------VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISL 393
Query: 184 FKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
FK G +LVATDVAS+GLD P + HV+N+D+P +I++YVHRIGRTGR GK+G+AT F +
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
Query: 244 DKNIPLAKA-LVELMKEVNQEVPSWLSQ 270
+ L L++E Q +P L++
Sbjct: 454 KNQSEITLLDLKHLLQEAKQRIPPVLAE 481
>AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25319798-25322071
REVERSE
Length = 484
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 136/207 (65%), Gaps = 19/207 (9%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R+L +GV+I++ATPGRL+DM+E +L V YL LDEADRMLDMGFEPQIRKIV Q+
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 341
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDL-----IAQRVELVQD 115
+RQT+L+SAT+P E+++LA FL D +G STDL I Q +E+V
Sbjct: 342 ----PDRQTLLWSATWPREVETLARQFLRDPYKAIIG----STDLKANQSINQVIEIVPT 393
Query: 116 VDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQV 175
+K N L+ LL Q G+ L+FVETKRG D + L G+PA+AIHGDK Q
Sbjct: 394 PEKYNRLLTLLK-QLMDGSK-----ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQS 447
Query: 176 ERERALKSFKIGVTPILVATDVASRGL 202
ER+R L FK G +PI+ ATDVA+RGL
Sbjct: 448 ERDRVLAEFKSGRSPIMTATDVAARGL 474
>AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA
helicase 2); ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:7892641-7895145
FORWARD
Length = 616
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 162/269 (60%), Gaps = 15/269 (5%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R L+ GVD+ V TPGR++D+++RG ++L V+++ LDEAD+ML +GF + I++++
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL- 278
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRV---ELVQDVD 117
P +RQ+M+FSAT P I+SL +L++ LTV VG S +A + ++ D
Sbjct: 279 ---PEKRQSMMFSATMPSWIRSLTKKYLNNP--LTVDLVGDSDQKLADGITTYSIIADSY 333
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
R ++ L + A G +VF +TKR AD L + L+RS F A+HGD Q +R
Sbjct: 334 GRASIIGPLVTEHAKGGK-----CIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQR 387
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
ER L F+ G ILVATDVA+RGLD+P+V +++++LP + + +VHR GRTGRAGK G
Sbjct: 388 ERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGS 447
Query: 238 ATAFFSDKNIPLAKALVELMKEVNQEVPS 266
A +S K + + E+PS
Sbjct: 448 AILIYSQDQSRAVKIIEREVGSRFTELPS 476
>AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL
RNA HELICASE 1); ATP-dependent helicase/ DNA binding /
RNA binding | chr3:7887382-7889806 FORWARD
Length = 610
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 159/269 (59%), Gaps = 15/269 (5%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R L G+D+ V TPGR++D+++RG ++L V+++ LDEAD+ML +GF + I+Q++
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL- 290
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRV---ELVQDVD 117
P +RQ+M+FSAT P I+SL +L++ LT+ VG S +A + + D
Sbjct: 291 ---PAKRQSMMFSATMPSWIRSLTKKYLNNP--LTIDLVGDSDQKLADGITMYSIAADSY 345
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
R ++ L + HGK +VF +TKR AD L L++S + A+HGD Q +R
Sbjct: 346 GRASIIGPLVKE-----HGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQR 399
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
ER L F+ G ILVATDVA+RGLD+P+V V++++LP + + +VHR GRTGRAGK G
Sbjct: 400 ERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGS 459
Query: 238 ATAFFSDKNIPLAKALVELMKEVNQEVPS 266
A K + + + E+PS
Sbjct: 460 AILIHGQDQTRAVKMIEKEVGSRFNELPS 488
>AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 748
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 17/239 (7%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L +GVD++V TPGR++D+IE + LG V+YL LDEAD+ML +GFE + I++ +
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL---- 280
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVEL----VQDVDKR 119
P +RQ+MLFSAT P ++ LA +L + L + VG + +A+ ++L KR
Sbjct: 281 PTKRQSMLFSATMPTWVKKLARKYLDNP--LNIDLVGDQDEKLAEGIKLYAIATTSTSKR 338
Query: 120 NHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
L +L+ G T+VF +TKR AD + LS S A+HGD Q +RER
Sbjct: 339 TILSDLITVYAKGGK------TIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRER 391
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L +F+ G +LVATDVASRGLDIP+V V++++LP D + +VHR GRTGRAGK G A
Sbjct: 392 TLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSA 450
>AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 747
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 17/239 (7%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L +GVD++V TPGR++D+IE + LG V+YL LDEAD+ML +GFE + I++ +
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL---- 280
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVEL----VQDVDKR 119
P +RQ+MLFSAT P ++ LA +L + L + VG + +A+ ++L KR
Sbjct: 281 PTKRQSMLFSATMPTWVKKLARKYLDNP--LNIDLVGDQDEKLAEGIKLYAIATTSTSKR 338
Query: 120 NHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
L +L+ G T+VF +TKR AD + LS S A+HGD Q +RER
Sbjct: 339 TILSDLITVYAKGGK------TIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRER 391
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
L +F+ G +LVATDVASRGLDIP+V V++++LP D + +VHR GRTGRAGK G A
Sbjct: 392 TLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSA 450
>AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr1:9843084-9845002
REVERSE
Length = 614
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 29/285 (10%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L +G +I++ATPGRL+D +ER V L YL LDEADRM+DM FEPQ+ ++ +D+ P
Sbjct: 325 LSQGCEIVIATPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEV---LDVMP 381
Query: 64 PGE----------------RQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIA 107
R T +FSAT ++ LA FL + + +T+G +T I
Sbjct: 382 CSNLKPEKEDEELEEKKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIG---ETTKFIT 438
Query: 108 QRVELVQDVDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIA 167
Q+V + ++ DK + L +L+ + G +VFV T+ D + L + G +
Sbjct: 439 QQVIMTKESDKFSRLKKLI------DDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVT 492
Query: 168 -IHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRI 226
+H K Q +R+ +L+ FK +LV TDV RGLDI ++ V+N+D+P +D Y HRI
Sbjct: 493 TLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRI 552
Query: 227 GRTGRAGKSGLATAFFSDKNIPLAKALVELMKEVNQEVPSWLSQY 271
GRTGRAGK+G+AT F + ++ + L + + E N VP L+++
Sbjct: 553 GRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNSLVPPELARH 597
>AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2949152-2952205 REVERSE
Length = 989
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 154/273 (56%), Gaps = 42/273 (15%)
Query: 4 LEKGVDILVATPGRLVDMI--ERGRVS-LGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
L++G +I+V TPGR++D++ G+++ L V YL +DEADRM DMGFEPQI +IVQ +
Sbjct: 516 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--N 573
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
+ P +RQT+LFSATFP ++++LA L+ + + VG I Q VE+ + ++ +
Sbjct: 574 IRP--DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFS 631
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
L+ELL G ++ LVFV ++ E++
Sbjct: 632 RLLELL------GEWYEKGKVLVFVRSQ-----------------------------EKS 656
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
+ FK V +L+AT VA+RGLD+ + VVNFD P +DYVHR+GRTGRAG+ G A
Sbjct: 657 ISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 716
Query: 241 FFSDKNIPLAKALVELMKEVNQEVPSWLSQYAE 273
F S+ + A LV+ ++ Q VP + AE
Sbjct: 717 FISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2980483-2983268 REVERSE
Length = 541
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 140/261 (53%), Gaps = 9/261 (3%)
Query: 8 VDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGER 67
D+L++TP RL I+ ++ L V+YL LDE+D++ + QI +V+ P
Sbjct: 259 CDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNP---SI 315
Query: 68 QTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLMELLH 127
LFSAT P ++ LA + D + + +GR ++++ + Q+ LV + L+ L
Sbjct: 316 IRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQK--LVFAGSEEGKLLALRQ 373
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
+ S N L+FV++K A L L A IH D ERE A+ F+ G
Sbjct: 374 SFAESLNPP----VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAG 429
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNI 247
+L+ATDV +RG+D ++ V+N+D P Y+HRIGR+GRAG+SG A F++++++
Sbjct: 430 EKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDV 489
Query: 248 PLAKALVELMKEVNQEVPSWL 268
P + + M EVPSW+
Sbjct: 490 PFLRNIANTMMSSGCEVPSWI 510
>AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:5568482-5570487 REVERSE
Length = 491
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 18/265 (6%)
Query: 10 ILVATPGRLVDMIERGR---VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGE 66
I++ TPGR+ ++E K+L LDEADR+LD+GF+ ++R I Q + P
Sbjct: 179 IVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL----PKS 234
Query: 67 RQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLMELL 126
RQT+LFSAT +Q+L + F + D + Q+ + +D D + + L+
Sbjct: 235 RQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQF-IFEDKDAKE--LYLV 291
Query: 127 HAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKI 186
H + G R+ ++FV T R L L IA+H Q R AL FK
Sbjct: 292 HILSQMEDKGIRS-AMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKS 350
Query: 187 GVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKN 246
G PIL+ATDVASRGLDIP V V+N+D+P+D DYVHR+GRT RAG+ GLA + ++ +
Sbjct: 351 GKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETD 410
Query: 247 IPLAKALVELMKEVNQEVPSWLSQY 271
V+L+ ++ +EV + Y
Sbjct: 411 -------VKLIHKIEEEVGKKMEPY 428
>AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10) |
chr5:24546601-24549148 REVERSE
Length = 456
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 15/259 (5%)
Query: 10 ILVATPGRLVD-MIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQ 68
++VATPGRL D M + SL +KYL LDEADR+L+ FE + +I++++ P ER+
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI----PLERK 197
Query: 69 TMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLMELLHA 128
T LFSAT +++ L L + + + S+ D + Q+ V K +L+ +L
Sbjct: 198 TFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSE 257
Query: 129 QKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIGV 188
S +++F T G L L GF AI I G Q +R AL FK G
Sbjct: 258 MPES-------TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGE 310
Query: 189 TPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNIP 248
ILV TDVASRGLDIP V V+N+D+P + DY+HR+GRT RAG+SG+ + + +
Sbjct: 311 CNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYEL- 369
Query: 249 LAKALVELMKEVNQEVPSW 267
+ +++ K + +++P +
Sbjct: 370 --EWYIQIEKLIGKKLPEY 386
>AT3G19760.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative | chr3:6863790-6866242 FORWARD
Length = 408
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 12/266 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
R LE GV ++ TPGR+ DMI+R + +K L LDE+D ML GF+ QI + + +
Sbjct: 147 IRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL- 205
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVD-KR 119
P + Q L SAT PHEI + S F+++ + + V R + + I Q V+ + K
Sbjct: 206 ---PPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKF 262
Query: 120 NHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+ L +L + ++F TKR D L + F ++HGD Q ER+
Sbjct: 263 DTLCDLYDTLTITQ-------AVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDA 315
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
+ F+ G + +L+ TDV +RG+D+ VS V+N+DLP + + Y+HRIGR+GR G+ G+A
Sbjct: 316 IMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375
Query: 240 AFFSDKNIPLAKALVELMKEVNQEVP 265
F +I + + + + E+P
Sbjct: 376 NFVKSDDIKILRDIEQYYSTQIDEMP 401
>AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 11/266 (4%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
+++GV++++ TPGR+VD++ + + L + LDE D ML GF Q+ +I Q + P
Sbjct: 233 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP- 291
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
Q +LFSAT E++ + + I +++G + Q V K+ L
Sbjct: 292 ----QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF 347
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSR-SGFPAIAIHGDKVQVERERALK 182
++L +Q NH K +V+V ++ GAD L + ++ +G A++IHG+K ER +
Sbjct: 348 DILRSQ----NHFKPP-AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMG 402
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
SF G P+LV+T V RG+D+ V V+ FD+P I +Y+H IGR R G+ G A F
Sbjct: 403 SFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 462
Query: 243 SDKNIPLAKALVELMKEVNQEVPSWL 268
++ + L LV +K +P L
Sbjct: 463 NEDDRNLFPDLVAALKSSGAAIPKEL 488
>AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 11/266 (4%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
+++GV++++ TPGR+VD++ + + L + LDE D ML GF Q+ +I Q + P
Sbjct: 233 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP- 291
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
Q +LFSAT E++ + + I +++G + Q V K+ L
Sbjct: 292 ----QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF 347
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSR-SGFPAIAIHGDKVQVERERALK 182
++L +Q NH K +V+V ++ GAD L + ++ +G A++IHG+K ER +
Sbjct: 348 DILRSQ----NHFKPP-AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMG 402
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
SF G P+LV+T V RG+D+ V V+ FD+P I +Y+H IGR R G+ G A F
Sbjct: 403 SFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 462
Query: 243 SDKNIPLAKALVELMKEVNQEVPSWL 268
++ + L LV +K +P L
Sbjct: 463 NEDDRNLFPDLVAALKSSGAAIPKEL 488
>AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359628-360734 FORWARD
Length = 368
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 11/266 (4%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
+++GV++++ TPGR+VD++ + + L + LDE D ML GF Q+ +I Q + P
Sbjct: 96 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP- 154
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
Q +LFSAT E++ + + I +++G + Q V K+ L
Sbjct: 155 ----QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF 210
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSR-SGFPAIAIHGDKVQVERERALK 182
++L +Q NH K +V+V ++ GAD L + ++ +G A++IHG+K ER +
Sbjct: 211 DILRSQ----NHFKPP-AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMG 265
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
SF G P+LV+T V RG+D+ V V+ FD+P I +Y+H IGR R G+ G A F
Sbjct: 266 SFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 325
Query: 243 SDKNIPLAKALVELMKEVNQEVPSWL 268
++ + L LV +K +P L
Sbjct: 326 NEDDRNLFPDLVAALKSSGAAIPKEL 351
>AT1G51380.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:19047960-19049967
FORWARD
Length = 392
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 14/249 (5%)
Query: 1 FRNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMD 60
+ LE+GV + TPGR+ DMI+RG + VK L LDE+D ML G + QI + + +
Sbjct: 134 IKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL- 192
Query: 61 MPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRN 120
P + Q L SAT P EI + F++D + + V + + I Q DVDK
Sbjct: 193 ---PHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQ---YYVDVDKEE 246
Query: 121 HLMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+ L +G+ + ++F T++ D L + S F ++HGDK Q ER+
Sbjct: 247 WKFDTL-----CDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERD 301
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLA 238
+ F+ + +L+A+DV +RG+D+ VSHV+N+D+P + + Y+HRIGR GR G+ G+A
Sbjct: 302 DIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVA 361
Query: 239 TAFFSDKNI 247
F ++
Sbjct: 362 INFVKSSDM 370
>AT1G72730.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:27378040-27379593
REVERSE
Length = 414
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 141/267 (52%), Gaps = 14/267 (5%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R L+ GV ++V TPGR+ D++ R + +K LDEAD ML GF+ QI I Q +
Sbjct: 154 RVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLL-- 211
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNH 121
P + Q +FSAT P E + F++ + + V R + + I Q +VDK
Sbjct: 212 --PSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ---FYVNVDKEEW 266
Query: 122 LMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+E L + A+T ++FV T+R D L + A HGD Q R+
Sbjct: 267 KLETL-----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 321
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
++ F+ G + +L+ TD+ +RG+D+ VS V+NFDLP ++Y+HRIGR+GR G+ G+A
Sbjct: 322 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 381
Query: 240 AFFSDKNIPLAKALVELMKEVNQEVPS 266
F + ++ + + V +E+PS
Sbjct: 382 NFMTSEDERMMADIQRFYNVVVEELPS 408
>AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28) |
chr4:9362176-9366449 REVERSE
Length = 789
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 9/248 (3%)
Query: 9 DILVATPGRLVDMIERG-RVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGER 67
DI+VATPGR++D + V L + L LDEADR+L GF +I ++V+ P R
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLC----PKRR 345
Query: 68 QTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLMELLH 127
QTMLFSAT E++ L L+ + L+ + + V ++ + N LL
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLL- 404
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
+ ++ ++F TK+ A L+ +G A +HG+ Q +R +L+ F+
Sbjct: 405 ---SLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 461
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNI 247
L+ATDVA+RGLDI V V+N+ P++ID YVHR+GRT RAG+ G A F +D +
Sbjct: 462 EVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDR 521
Query: 248 PLAKALVE 255
L K + +
Sbjct: 522 SLLKVIAK 529
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594128 REVERSE
Length = 412
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 14/267 (5%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R L+ GV ++V TPGR+ DM++R + +K LDEAD ML GF+ QI I Q +
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL-- 209
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNH 121
P + Q +FSAT P E + F+S + + V R + + I Q +V+K
Sbjct: 210 --PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQ---FYVNVEKEEW 264
Query: 122 LMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+E L + A+T ++FV T+R D L + A HGD Q R+
Sbjct: 265 KLETL-----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 319
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
++ F+ G + +L+ TD+ +RG+D+ VS V+NFDLP ++Y+HRIGR+GR G+ G+A
Sbjct: 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 379
Query: 240 AFFSDKNIPLAKALVELMKEVNQEVPS 266
F + + + + + V +E+PS
Sbjct: 380 NFVTRDDERMLFDIQKFYNVVVEELPS 406
>AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase/
translation initiation factor | chr1:20260495-20262018
FORWARD
Length = 412
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 14/267 (5%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R L+ GV ++V TPGR+ DM+ R + +K LDEAD ML GF+ QI I Q +
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLL-- 209
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNH 121
P + Q +FSAT P E + F+S + + V R + + I Q +V+K +
Sbjct: 210 --PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQ---FYVNVEKEDW 264
Query: 122 LMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+E L + A+T ++FV T+R D L + A HGD Q R+
Sbjct: 265 KLETL-----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 319
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
++ F+ G + +L+ TD+ +RG+D+ VS V+NFDLP ++Y+HRIGR+GR G+ G+A
Sbjct: 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 379
Query: 240 AFFSDKNIPLAKALVELMKEVNQEVPS 266
F + + + + + V +E+PS
Sbjct: 380 NFVTLDDQRMLFDIQKFYNVVVEELPS 406
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594094 REVERSE
Length = 402
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 14/267 (5%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R L+ GV ++V TPGR+ DM++R + +K LDEAD ML GF+ QI I Q +
Sbjct: 142 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL-- 199
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNH 121
P + Q +FSAT P E + F+S + + V R + + I Q +V+K
Sbjct: 200 --PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQ---FYVNVEKEEW 254
Query: 122 LMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+E L + A+T ++FV T+R D L + A HGD Q R+
Sbjct: 255 KLETL-----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 309
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
++ F+ G + +L+ TD+ +RG+D+ VS V+NFDLP ++Y+HRIGR+GR G+ G+A
Sbjct: 310 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 369
Query: 240 AFFSDKNIPLAKALVELMKEVNQEVPS 266
F + + + + + V +E+PS
Sbjct: 370 NFVTRDDERMLFDIQKFYNVVVEELPS 396
>AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:6136333-6139510 FORWARD
Length = 621
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 139/273 (50%), Gaps = 33/273 (12%)
Query: 3 NLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMP 62
+L +D++V TPGR++ IE G + G + YL LDEAD M D GF P+IRK +
Sbjct: 235 SLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF-----LA 289
Query: 63 PPGER---------QTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSST--DLIAQR-- 109
P +R QT+L +AT +Q L D F + + +ST IA
Sbjct: 290 PLNQRALKTNDQGFQTVLVTATMTMAVQKLV-----DEEFQGIEHLRTSTLHKKIANARH 344
Query: 110 --VELVQDVDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIA 167
++L DK L+++L A G+ +VF T + A++H+LS + +
Sbjct: 345 DFIKLSGGEDKLEALLQVLEPSLAKGSK-----VMVFCNTLNSSRAVDHYLSENQISTVN 399
Query: 168 IHGDKVQVERERALKSFK--IGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHR 225
HG+ +R LK FK G P LV TD+A+RGLD+ V HVV FD PK+ DY+HR
Sbjct: 400 YHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHR 458
Query: 226 IGRTGRAGKSGLATAFFSDKNIPLAKALVELMK 258
GRT R G G T+ S K+ LA + E M+
Sbjct: 459 TGRTARMGAKGKVTSLVSRKDQMLAARIEEAMR 491
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592586-4594128 REVERSE
Length = 415
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDM 61
R L+ GV ++V TPGR+ DM++R + +K LDEAD ML GF+ QI I Q +
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL-- 209
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNH 121
P + Q +FSAT P E + F+S + + V R + + I Q +V+K
Sbjct: 210 --PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQ---FYVNVEKEEW 264
Query: 122 LMELLHAQKASGNHGKRALT--LVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+E L + A+T ++FV T+R D L + A HGD Q R+
Sbjct: 265 KLETL-----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 319
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
++ F+ G + +L+ TD+ +RG+D+ VS V+NFDLP ++Y+HRIGR+GR G+ G+A
Sbjct: 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 379
Query: 240 AFFS 243
F +
Sbjct: 380 NFVT 383
>AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3553334-3556646
FORWARD
Length = 427
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 127/236 (53%), Gaps = 13/236 (5%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQT 69
I+V TPGR++ + +SL V++ LDE D+ML+ +R+ VQ++ P ++Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQV 225
Query: 70 MLFSATFPHEIQSLASDFLSDYIFLTVGRVGSST--DLIAQRVELVQDVDKRNHLMELLH 127
M+FSAT EI+ + F+ D + + V T L+ ++L +++K L +LL
Sbjct: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLD 284
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
A + ++FV++ A L L FP+I IH Q ER KSFK G
Sbjct: 285 ALDFNQ-------VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 337
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
ILVATD+ RG+DI V+ V+N+D+P D Y+HR+GR GR G GLA F +
Sbjct: 338 HKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
>AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 427
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 127/236 (53%), Gaps = 13/236 (5%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQT 69
I+V TPGR++ + +SL V++ LDE D+ML+ +R+ VQ++ P ++Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQV 225
Query: 70 MLFSATFPHEIQSLASDFLSDYIFLTVGRVGSST--DLIAQRVELVQDVDKRNHLMELLH 127
M+FSAT EI+ + F+ D + + V T L+ ++L +++K L +LL
Sbjct: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLD 284
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
A + ++FV++ A L L FP+I IH Q ER KSFK G
Sbjct: 285 ALDFNQ-------VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 337
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
ILVATD+ RG+DI V+ V+N+D+P D Y+HR+GR GR G GLA F +
Sbjct: 338 HKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
>AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3554272-3556646
FORWARD
Length = 344
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 127/236 (53%), Gaps = 13/236 (5%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQT 69
I+V TPGR++ + +SL V++ LDE D+ML+ +R+ VQ++ P ++Q
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQV 142
Query: 70 MLFSATFPHEIQSLASDFLSDYIFLTVGRVGSST--DLIAQRVELVQDVDKRNHLMELLH 127
M+FSAT EI+ + F+ D + + V T L+ ++L +++K L +LL
Sbjct: 143 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLD 201
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
A + ++FV++ A L L FP+I IH Q ER KSFK G
Sbjct: 202 ALDFNQ-------VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 254
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
ILVATD+ RG+DI V+ V+N+D+P D Y+HR+GR GR G GLA F +
Sbjct: 255 HKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 310
>AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18) |
chr5:1612077-1615195 FORWARD
Length = 593
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 37/273 (13%)
Query: 5 EKGVDILVATPGRLVDMIERGRV-SLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
E+G ++L+ TPGRL D++ER + ++ L LDEADR+L+MGF+ Q+ I+ ++
Sbjct: 140 EEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL---- 195
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTV---GRVGSSTDLIAQRVE-------LV 113
P +R+T LFSAT ++ LA L + + + V + SS L + +
Sbjct: 196 PKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYME 255
Query: 114 QDVDKRN-HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHW-LSRSGFPA------ 165
+ DK++ L++LL N K+ +VF T ++++W L S PA
Sbjct: 256 CEADKKSSQLVDLLIK-----NSDKK--LIVFFMT---CASVDYWGLVLSKIPALKSISL 305
Query: 166 IAIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHR 225
I IHGD Q R++AL SF + L+ TDVA+RGLDIP + +VV +D P+D + + HR
Sbjct: 306 IPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHR 365
Query: 226 IGRTGRAGKSGLATAFFSDKNIPLAKALVELMK 258
GRT R G+ G A F +P +A VE M+
Sbjct: 366 AGRTARLGRQGRAIVFL----LPKEEAYVEFMR 394
>AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) |
chr5:2790341-2794059 FORWARD
Length = 850
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 137/278 (49%), Gaps = 21/278 (7%)
Query: 8 VDILVATPGRLVDMIERGR---VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 64
ILVATPGRL D IE L VK L LDEAD +LDMGF I +I+ + P
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAV----P 566
Query: 65 GERQTMLFSATFPHEIQSLASDFLS-DYIFLTVGRVGS-STDLIAQRVELVQDVDKRNHL 122
+RQT LFSAT P E++ + L D+ F+ + GS T ++ ++ +D+ L
Sbjct: 567 KQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSL 626
Query: 123 MELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALK 182
+ +L + + N + ++F T + LS+ IH K Q R R
Sbjct: 627 LHVLLKEHIADNVDYK--VIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSD 684
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
F+ ILV +DV++RG+D P VS VV LP D + Y+HR+GRTGR GK G
Sbjct: 685 EFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 744
Query: 243 ---------SDKNIPLAKA-LVELMKEVNQEVPSWLSQ 270
S K++P+ K+ L + E + V LSQ
Sbjct: 745 APWEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQ 782
>AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:18859836-18862318 FORWARD
Length = 528
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 123/241 (51%), Gaps = 24/241 (9%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L + V +LV TPGR++D+ ++G L L +DEAD++L + F+P I +++Q +
Sbjct: 269 LYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFL---- 324
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSD-YIF-----LTVGRVGSSTDLIAQRVELVQDVD 117
P RQ ++FSATFP ++S +L YI LT+ V + +R Q V
Sbjct: 325 PESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEER----QKVH 380
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
N L L ++ ++F + + L ++ G+ IH VQ R
Sbjct: 381 CLNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHR 430
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
R F+ G LV TD+ +RG+DI V+ V+NFD P+ + Y+HR+GR+GR G GL
Sbjct: 431 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 490
Query: 238 A 238
A
Sbjct: 491 A 491
>AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L + V +LV TPGR++D+ ++G L L +DEAD++L F+P + ++ +
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFL---- 301
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSD-YIF-----LTVGRVGSSTDLIAQRVELVQDVD 117
P RQ ++FSATFP ++ FL++ Y+ LT+ + + +R Q +
Sbjct: 302 PESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEER----QKIH 357
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
N L L ++ ++F + + L ++ G+ IH +Q R
Sbjct: 358 CLNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR 407
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
R F+ G LV TD+ +RG+DI V+ V+NFD PK+ + Y+HR+GR+GR G GL
Sbjct: 408 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL 467
Query: 238 ATAFFS-DKNIPLAKALVELMKEVNQEVPSWLSQ 270
A + + L + EL E+ Q +P + Q
Sbjct: 468 AVNLITYEDRFNLYRIEQELGTEIKQ-IPPHIDQ 500
>AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L + V +LV TPGR++D+ ++G L L +DEAD++L F+P + ++ +
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFL---- 301
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSD-YIF-----LTVGRVGSSTDLIAQRVELVQDVD 117
P RQ ++FSATFP ++ FL++ Y+ LT+ + + +R Q +
Sbjct: 302 PESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEER----QKIH 357
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
N L L ++ ++F + + L ++ G+ IH +Q R
Sbjct: 358 CLNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR 407
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
R F+ G LV TD+ +RG+DI V+ V+NFD PK+ + Y+HR+GR+GR G GL
Sbjct: 408 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL 467
Query: 238 ATAFFS-DKNIPLAKALVELMKEVNQEVPSWLSQ 270
A + + L + EL E+ Q +P + Q
Sbjct: 468 AVNLITYEDRFNLYRIEQELGTEIKQ-IPPHIDQ 500
>AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr5:24980542-24983879
REVERSE
Length = 671
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 9/244 (3%)
Query: 3 NLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMP 62
L++GVDI+V TPGR+ D IER + +++ LDEAD ML MGF + I+ +++
Sbjct: 220 KLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVE-- 277
Query: 63 PPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHL 122
+ QT+LFSAT P ++++++ FL T+ VG+ + V + + +
Sbjct: 278 DSTKVQTLLFSATLPSWVKNISNRFLKRD-QKTIDLVGNDKMKASNSVRHIAIPCNKAAM 336
Query: 123 MELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALK 182
L+ + + G + T++F ETK L L S A+HG+ Q +RE L
Sbjct: 337 ARLIPDIISCYSSGGQ--TIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLA 390
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
F+ G LVAT+VA+RGLDI V ++ + P++++ Y+HR GRTGRAG +G+A +
Sbjct: 391 GFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY 450
Query: 243 SDKN 246
+
Sbjct: 451 DSRK 454
>AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26897235-26899381 REVERSE
Length = 558
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 32/281 (11%)
Query: 5 EKGVDILVATPGRLVDMIERGR-VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
E+G ++L+ TPGRL DM++R + ++ L LDEADR+LDMGF+ Q+ I+ ++
Sbjct: 140 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL---- 195
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVG---RVGSSTDLIAQRVELVQDVDKRN 120
P +R+T LFSAT + LA L + + + G + +S+ L + ++ D K +
Sbjct: 196 PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEAD-QKSS 254
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHW-LSRSGFPAI------AIHGDKV 173
L+ LL K + L + F+ +++W L S P + + HG
Sbjct: 255 QLVHLLIENK------NKKLVVFFM----TCACVDYWGLVLSKIPTLKSISFFSTHGKMD 304
Query: 174 QVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAG 233
Q R+ AL SF + +L+ TDVA+RGLDIP + +VV +D P+D D ++HR+GRT R
Sbjct: 305 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARME 364
Query: 234 KSGLATAFFSDKNIPLAKALVELMKEVNQEVPSWLSQYAEN 274
+ G A F +P VE M+ + VP + +EN
Sbjct: 365 RQGRAIVFL----MPKETDYVEFMR--IRRVPLQERKCSEN 399
>AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative |
chr5:25472598-25475196 REVERSE
Length = 522
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 8 VDILVATPGRLVDMIERG---RVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 64
ILVATPGRL D IE L VK L LDEAD +LDMGF I +I+ + P
Sbjct: 183 CQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAV----P 238
Query: 65 GERQTMLFSATFPHEIQSLASDFLS-DYIFLTVGRVGS-STDLIAQRVELVQDVDKRNHL 122
ERQT LFSAT P E++ + L D+ F+ G+ T +++ ++ +D+ L
Sbjct: 239 KERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSL 298
Query: 123 MELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALK 182
+ L + GN + + VF T + L IH K Q R R
Sbjct: 299 LYTLLREHIMGNVDYKVI--VFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSN 356
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
F+ ILV +DV++RG+D P V+ V+ LPKD + Y+HR+GRTGR GK G
Sbjct: 357 EFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLL 416
Query: 243 ---------SDKNIPLAKA 252
S K++P+ K+
Sbjct: 417 APWEEYFLSSLKDLPITKS 435
>AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ RNA
binding / helicase/ hydrolase, acting on acid
anhydrides, in phosphorus-containing anhydrides /
nucleic acid binding | chr1:28947492-28951526 REVERSE
Length = 891
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)
Query: 1 FRNLEKGVDILVATPGRLVDMI-ERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQM 59
F L KG D+++ATPGRL+ ++ E ++L V+Y+ DEAD + MGF Q+ +I+ Q+
Sbjct: 142 FEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL 201
Query: 60 DMPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKR 119
RQT+LFSAT P + A L + + + + + V+ +K
Sbjct: 202 S----ENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKY 257
Query: 120 NHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERER 179
+ L+ L+ +S TL+FV TK + + +GD Q R+
Sbjct: 258 SALLYLVREHISSDQQ-----TLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKI 312
Query: 180 ALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLAT 239
+ F+ T +L+ TD+A+RG+DIP + +V+N+D P +VHR+GR RAG++G A
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAY 372
Query: 240 AFFSDKNIP 248
+F + +++P
Sbjct: 373 SFVTPEDMP 381
>AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L + V +LV TPGR++D+ ++G L L +DEAD++L F+P + +++Q +
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFL---- 294
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSD-YIF-----LTVGRVGSSTDLIAQRVELVQDVD 117
P RQ ++FSATFP +++ L Y+ LT+ V + +R Q V
Sbjct: 295 PQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEER----QKVH 350
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
N L L ++ ++F + + L ++ G+ IH VQ R
Sbjct: 351 CLNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHR 400
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
R F+ G LV TD+ +RG+DI V+ V+NFD P+ + Y+HR+GR+GR G GL
Sbjct: 401 NRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 460
Query: 238 ATAFFS-DKNIPLAKALVELMKEVNQEVPSWLSQ 270
A + + + + EL E+ + +PS + Q
Sbjct: 461 AVNLVTYEDRFKMYQTEQELGTEI-KPIPSNIDQ 493
>AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
L + V +LV TPGR++D+ ++G L L +DEAD++L F+P + +++Q +
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFL---- 294
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSD-YIF-----LTVGRVGSSTDLIAQRVELVQDVD 117
P RQ ++FSATFP +++ L Y+ LT+ V + +R Q V
Sbjct: 295 PQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEER----QKVH 350
Query: 118 KRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVER 177
N L L ++ ++F + + L ++ G+ IH VQ R
Sbjct: 351 CLNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHR 400
Query: 178 ERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGL 237
R F+ G LV TD+ +RG+DI V+ V+NFD P+ + Y+HR+GR+GR G GL
Sbjct: 401 NRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 460
Query: 238 ATAFFS-DKNIPLAKALVELMKEVNQEVPSWLSQ 270
A + + + + EL E+ + +PS + Q
Sbjct: 461 AVNLVTYEDRFKMYQTEQELGTEI-KPIPSNIDQ 493
>AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE
SUPPRESSOR 2); ATP-dependent helicase/ RNA binding |
chr5:2794540-2797548 FORWARD
Length = 563
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 133/266 (50%), Gaps = 21/266 (7%)
Query: 2 RNLEKG-VDILVATPGRLVDMIERGR---VSLGMVKYLALDEADRMLDMGFEPQIRKIVQ 57
R L+K ILVATPGRL D I+ L VK L LDEAD +LDMGF +I +I+
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Query: 58 QMDMPPPGERQTMLFSATFPHEIQSLASDFLS-DYIFLTVGRVGS-STDLIAQRVELVQD 115
+ P +RQT LFSAT E++ + L D+ F+ + G+ T ++ ++
Sbjct: 262 AV----PKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIAS 317
Query: 116 VDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQV 175
+D+ L+ L + + N G + + +F T + L + IH K Q
Sbjct: 318 LDRHFSLLYGLLKKHITDNVGYKVI--IFCTTAMVTRLVADLLGKLSLNVREIHSRKPQS 375
Query: 176 ERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKS 235
R R F+ + ILV +DV++RG+D P VS VV LP D + Y+HR+GRTGR GK
Sbjct: 376 YRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKE 435
Query: 236 GLATAFF---------SDKNIPLAKA 252
G S K++P+ K+
Sbjct: 436 GEGVLLLAPWEEYFLSSVKDLPITKS 461
>AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 468
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 128/269 (47%), Gaps = 38/269 (14%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQT 69
I+V TPGR++ + +SL V++ LDE D+ML+ +R+ VQ++ P ++Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQV 225
Query: 70 MLFSATFPHEIQSLASDFLSDYIFLTVG-----------------------RVGSSTDLI 106
M+FSAT EI+ + F+ D + G R+G +
Sbjct: 226 MMFSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGFGSGYCVFPRFHRARMGLNVPSN 285
Query: 107 AQRVELVQDVDKRNHLMELL-HAQKASGNHGKRAL-----------TLVFVETKRGADAL 154
+E+ D + + L L+ H K S R L ++FV++ A L
Sbjct: 286 IDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 345
Query: 155 EHWLSRSGFPAIAIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFD 214
L FP+I IH Q ER KSFK G ILVATD+ RG+DI V+ V+N+D
Sbjct: 346 NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYD 405
Query: 215 LPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
+P D Y+HR+GR GR G GLA F +
Sbjct: 406 MPDSADTYLHRVGRAGRFGTKGLAITFVA 434
>AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 486
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 131/287 (45%), Gaps = 56/287 (19%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQT 69
I+V TPGR++ + +SL V++ LDE D+ML+ +R+ VQ++ P ++Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQV 225
Query: 70 MLFSATFPHEIQSLASDFLSDYI----------------------------------FLT 95
M+FSAT EI+ + F+ D++ F
Sbjct: 226 MMFSATLSKEIRPVCKKFMQDFLENETVSVRLFSFGVENSEWRLCSFGFIVLVWVSMFRA 285
Query: 96 VGRVGSSTDLIAQR-------VELVQDVDKRNHLMELL-HAQKASGNHGKRAL------- 140
+ S T + ++ +E+ D + + L L+ H K S R L
Sbjct: 286 ILMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL 345
Query: 141 ----TLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIGVTPILVATD 196
++FV++ A L L FP+I IH Q ER KSFK G ILVATD
Sbjct: 346 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 405
Query: 197 VASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFS 243
+ RG+DI V+ V+N+D+P D Y+HR+GR GR G GLA F +
Sbjct: 406 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 452
>AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:26358328-26361244 FORWARD
Length = 633
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 4 LEKGVDILVATPGRLVDMIERGR-VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMP 62
L KGV++LVATPGRL+D +E +K+L +DEADR+L+ FE ++KI+ +
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLL--- 329
Query: 63 PPGERQTMLFSATFPHEIQSLASDFLSDYIFLTV--GRVGSSTDLIAQRVELVQDVDKRN 120
P RQT LFSAT +++ LA L+ +++ V GR + + + Q +V +
Sbjct: 330 -PKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLL 388
Query: 121 HLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERA 180
L+ L GK+ + +VF T + F + I G Q +R
Sbjct: 389 FLLTFLKR-----FQGKKKI-MVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPT 442
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRA-GKSGLAT 239
F T IL+ T+VA+RGLD PHV +V +D P + DY+HR+GRT R G G A
Sbjct: 443 FLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKAL 502
Query: 240 AFFSDKNIPLAKAL 253
+ + + + L
Sbjct: 503 LVLTPQELKFIQYL 516
>AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:23463284-23466451 REVERSE
Length = 798
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 11/234 (4%)
Query: 8 VDILVATPGRLVDMIER--GRVS-LGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 64
IL+ATPGRL+D IE G S L +K +DEAD +LD+GF + KI+ + P
Sbjct: 458 CQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCL----P 513
Query: 65 GERQTMLFSATFPHEIQSLASDFLS-DYIFL-TVGRVGSSTDLIAQRVELVQDVDKRNHL 122
+RQ++LFSAT P E++ ++ L D+ ++ T+G T ++ +V + HL
Sbjct: 514 RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHL 573
Query: 123 MELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALK 182
+ H K N+ +VF T + L IH K Q+ R R
Sbjct: 574 VP--HLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSD 631
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSG 236
FK ILV +DV++RG++ P V+ V+ +P D + Y+HR+GRTGR GK G
Sbjct: 632 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 685
>AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 4); ATP-dependent helicase/ RNA
helicase/ RNA-dependent ATPase | chr3:19687968-19690423
FORWARD
Length = 496
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 40/283 (14%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGERQ 68
+++ TPG L + R+ L +K L DEAD ML GF KI++ + P Q
Sbjct: 217 VVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPN-FQ 275
Query: 69 TMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQ----------RVELVQDVDK 118
+LFSATF ++ + + D L V R + D + Q ++E+++D
Sbjct: 276 VLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKD--- 332
Query: 119 RNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERE 178
+MEL G+ G+ T++FV+TK A + L+ G+ ++HG+ + +R+
Sbjct: 333 --QIMEL-------GDIGQ---TIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 179 RALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPK-------DIDDYVHRIGRTGR 231
+ +K FK +T +L+ATDV +RG D V+ VVN++LP D + Y+HR+GR GR
Sbjct: 381 KIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGR 440
Query: 232 AGKSGLATAFFSDKNIPLAKALVELMK---EVN-QEVPSWLSQ 270
G+ G D K ++E ++ E N +E+ SW S+
Sbjct: 441 FGRKGAVFNLLLDDG--WDKEVMEKIEKYFEANVKEIKSWNSE 481
>AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:3576483-3580396 FORWARD
Length = 845
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 11/234 (4%)
Query: 8 VDILVATPGRLVDMIER--GRVS-LGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 64
IL+ATPGRL+D IE G S L +K +DEAD +LD+GF+ + KI+ + P
Sbjct: 505 CQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCL----P 560
Query: 65 GERQTMLFSATFPHEIQSLASDFLS-DYIFL-TVGRVGSSTDLIAQRVELVQDVDKRNHL 122
+RQ++LFSAT P E++ ++ L D+ ++ T+G T ++ +V + HL
Sbjct: 561 RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHL 620
Query: 123 MELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALK 182
+ H K N+ +VF T + L IH K Q+ R
Sbjct: 621 VP--HLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSD 678
Query: 183 SFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSG 236
FK ILV +DV++RG++ P V+ V+ +P D + Y+HR+GRTGR GK G
Sbjct: 679 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 732
>AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:22298668-22301719 REVERSE
Length = 739
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 8 VDILVATPGRLVD-MIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGE 66
++ILV PGRL+ M E ++ L LDEADR+LD F+ Q+ I+ Q+ P
Sbjct: 194 MNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL----PKH 249
Query: 67 RQTMLFSATFPHEIQSLASDFLSD--YIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLME 124
RQT+LFSAT +++ LA L D YI + V ++ + Q V +V K + L
Sbjct: 250 RQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWS 309
Query: 125 LLHAQKASGNHGKRALTLVFVETKRGADALEHWLS--RSGFPAIAIHGDKVQVERERALK 182
+ S LVF+ TK+ + + R G P ++HG Q +R
Sbjct: 310 FIKTHLNSR-------ILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYS 362
Query: 183 SFKIGVTPILVATDVASRGLDIPH-VSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAF 241
F I +L TDV +RGLD V VV D P+D+ Y+HR+GRT R G + F
Sbjct: 363 QF-IERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLF 421
Query: 242 FSD------KNIPLAKALVELMKEVNQEV 264
+ + + AK ++L+K NQ++
Sbjct: 422 LTPSEEKMIEKLQEAKVPIKLIKANNQKL 450
>AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:6399724-6403007 REVERSE
Length = 568
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 15/236 (6%)
Query: 7 GVDILVATPGRLVDMIERGRVSL-GMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 65
G ++++ATPGRL+D ++ + + +K L +DEADR+L+ FE + KI++ + P
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKIL----PK 266
Query: 66 ERQTMLFSATFPHEIQSLASDFLSDYIFLTV--GRVGSSTDLIAQRVELVQDVDKRNHLM 123
RQT LFSAT +++ LA L+ + + V GR + + + Q +V + L+
Sbjct: 267 TRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPS---KQRLI 323
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKS 183
L+ K + N +VF T + + S IHG Q R +
Sbjct: 324 LLISFLKKNLNKK----IMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFD 379
Query: 184 FKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRA-GKSGLA 238
F IL+ TDVA+RGLDIP V ++ +D P +Y+HR+GRT R G G A
Sbjct: 380 FMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKA 435
>AT4G15850.1 | Symbols: ATRH1 | ATRH1; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr4:9001426-9004534
FORWARD
Length = 522
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 133/289 (46%), Gaps = 38/289 (13%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGR-VSLGMVKYLALDEADRMLDMGFE---PQIRKIVQ 57
+NLE VDILVATPGRL+D I + +L ++YL +DE DR+L ++ P + ++ Q
Sbjct: 170 QNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQ 229
Query: 58 QMD----------MPPP-GERQT--------------------MLFSATFPHEIQSLASD 86
D +P G QT M+ SAT + L
Sbjct: 230 TSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQL 289
Query: 87 FLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLMELLHAQKASGNHGKRALTLVFVE 146
L +F+T G GS L +++E ++ + + L A S K + VE
Sbjct: 290 DLHHPLFMTTG--GSRYRL-PEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVE 346
Query: 147 TKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPH 206
T R L ++ A G Q R + LK+F+ G +LVA+D +RG+D+
Sbjct: 347 TTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKG 406
Query: 207 VSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALVE 255
V++V+N+D+P ++HR GRT RAG++G S+ + L+E
Sbjct: 407 VTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLE 455
>AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17) |
chr2:16976783-16979392 FORWARD
Length = 609
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 63/313 (20%)
Query: 4 LEKGVDILVATPGRLVDMIERGRVSLGM-VKYLALDEADRMLDMGFEPQIRKIVQQM--- 59
L KG+ IL+ATPGRL+D ++ + ++++ DEAD +L++G+ +I +I++ +
Sbjct: 152 LRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSG 211
Query: 60 --------DMPPPG-ERQTMLFSATFPHEIQSLASDFLSDYIFL---------------- 94
D+ P G ++Q +L SAT ++ LA L D + +
Sbjct: 212 QNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESP 271
Query: 95 ---------TVGRVGSSTD-------LIAQRVELVQDVDKRNHLMELLHAQKASGNHGKR 138
V V S + + +Q V+ V L+ LL K
Sbjct: 272 AAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREAS 331
Query: 139 ALTLVFVETKRGADALEHWLSRSGFP------------------AIAIHGDKVQVERERA 180
+VF T+ D LS +P +HG Q +R A
Sbjct: 332 QKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSA 391
Query: 181 LKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATA 240
+FK +L++TDVA+RGLD P V ++ +D P + +YVHR+GRT R G+ G A
Sbjct: 392 FGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALL 451
Query: 241 FFSDKNIPLAKAL 253
F I K L
Sbjct: 452 FLQPIEIDYLKEL 464
>AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586);
ATP binding / ATP-dependent helicase/ helicase/ nucleic
acid binding | chr1:4351888-4353543 FORWARD
Length = 551
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 57/289 (19%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMP----PPG 65
I+V TPGR+ ++ + G++ ++L LDE D +L F I +I++ + P G
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKG 305
Query: 66 E------RQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVG----------------SST 103
E RQT+L SAT P + A + + + + +V +++
Sbjct: 306 EVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTS 365
Query: 104 DLIAQRVELVQD----------VDKRNH----LMELLHAQKASG-----NHGKRALTLVF 144
+ Q +Q + K H L +HA A NH ++ +V+
Sbjct: 366 EADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVY 425
Query: 145 VETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDI 204
RG ++ E +HGD ++ R LK FK G +LV ++++RGLD+
Sbjct: 426 KLEARGMNSAE------------MHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDV 473
Query: 205 PHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNIPLAKAL 253
VVN +LP D Y HR GRTGR G+ G + + + K +
Sbjct: 474 AECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKM 522
>AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2201531-2204662 FORWARD
Length = 781
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 34/276 (12%)
Query: 3 NLEKGVDILVATPGRLVDMIERGRVSLGMVKYLALDEADRML-DMGFEPQIRKIVQQMDM 61
NLE+GVD+L+ATPGR ++ G + L ++ LDE D + D FE ++ ++
Sbjct: 498 NLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINS--- 554
Query: 62 PPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRV------------GSSTDLIAQR 109
P Q + +AT P EI + + D + RV S D A++
Sbjct: 555 -SPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEK 613
Query: 110 VELVQDVDKRNHLMELLHAQKASGNHGKRALTLVF---VETKRGADALEHWLSRS--GFP 164
+K+ L++++ S T++F +ET R + + + R
Sbjct: 614 TPETAFQNKKTALLQIMEENPVSK-------TIIFCNKIETCRKVENIFKRVDRKERQLH 666
Query: 165 AIAIHGDKVQVERERALKSFKIGV----TPILVATDVASRGLDIPHVSHVVNFDLPKDID 220
+ H Q R ++ F + LV TD ASRG+D V HVV FD P+D
Sbjct: 667 VLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPS 726
Query: 221 DYVHRIGRTGRAGK-SGLATAFFSDKNIPLAKALVE 255
+YV R+GRT R + G A F K + LA+ ++E
Sbjct: 727 EYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIE 762
>AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:5738020-5743042
REVERSE
Length = 826
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 66/295 (22%)
Query: 2 RNLEKGVDILVATPGRLVDMIERGR---VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQ 58
R L++ +I+VATPGRL +++ G V L + + LDEADRM++ G +++ I+
Sbjct: 324 RRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDL 383
Query: 59 M---DMP-----------------PPGERQTMLFSATFPHEIQSLASDFLS--------- 89
+ D P P +RQT +FSAT +L+SDF
Sbjct: 384 LPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATI-----ALSSDFRKKLKRGSSKS 438
Query: 90 --------DYIFLTVGRVG----------SSTDLIAQRVE----LVQDVDKRNHLMELLH 127
+ I + R G ++T ++A ++E ++ +K +L +L
Sbjct: 439 KQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILS 498
Query: 128 AQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIG 187
HG+ T+VF + + L G + + Q R +++ F+
Sbjct: 499 V------HGQ-GRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRAS 551
Query: 188 VTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFF 242
IL+ATD+ +RG+DI +V ++++ LP + YVHR GRT RA G + A
Sbjct: 552 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALI 606
>AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26870262-26872152 REVERSE
Length = 465
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 40/214 (18%)
Query: 5 EKGVDILVATPGRLVDMIERGR-VSLGMVKYLALDEADRMLDMGFEPQIRKIVQQMDMPP 63
E+G ++L+ TPGRL DM++R + ++ L LDEADR+LDMGF+ Q+ I+ ++
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL---- 188
Query: 64 PGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHLM 123
P +R+T LFSAT + LA L + +L S+ L+ +E
Sbjct: 189 PKQRRTGLFSATQTQAVADLAKAGLRNP-YLKCEADQKSSQLVHLLIE------------ 235
Query: 124 ELLHAQKASGNHGKRALTLVFVETKRGADALEHW-LSRSGFPAIA------IHGDKVQVE 176
N K+ +VF T +++W L S P++ HG Q
Sbjct: 236 ----------NKNKK--LVVFFMT---CACVDYWGLVISKIPSLKSISFFPTHGKMDQKG 280
Query: 177 RERALKSFKIGVTPILVATDVASRGLDIPHVSHV 210
R+ AL SF + +L+ TDVA+RGLDIP + ++
Sbjct: 281 RDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6462100-6463687 FORWARD
Length = 315
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 40/275 (14%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGERQ 68
ILVAT L M+E+ + V+ L +DE D + + +RK++ +RQ
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFS--SCDKRQ 103
Query: 69 TMLFSATFPHEIQSLASDFLS------DYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHL 122
T+ SA+ P + D + D + + V + + R + + +K L
Sbjct: 104 TVFASASIPQH-KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVL 162
Query: 123 MELLHA----------------QKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAI 166
+ LL + K +GN L + F++T + +
Sbjct: 163 LALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTS----------YKGSLEIL 212
Query: 167 AIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRI 226
+ GD R +L + G +LV+TD+A+RG+D+P +H+ NFDLP+ + DY+HR
Sbjct: 213 LLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRA 272
Query: 227 GRTGRA----GKSGLATAFFSDKNIPLAKALVELM 257
GR GR K +A S++ L + ELM
Sbjct: 273 GRAGRKPFSDRKCIVANLITSEERFVLQRYENELM 307
>AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6461444-6463687 FORWARD
Length = 472
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 40/275 (14%)
Query: 10 ILVATPGRLVDMIERGRVSLGMVKYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGERQ 68
ILVAT L M+E+ + V+ L +DE D + + +RK++ +RQ
Sbjct: 203 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFS--SCDKRQ 260
Query: 69 TMLFSATFPHEIQSLASDFLS------DYIFLTVGRVGSSTDLIAQRVELVQDVDKRNHL 122
T+ SA+ P + D + D + + V + + R + + +K L
Sbjct: 261 TVFASASIPQH-KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVL 319
Query: 123 MELLHA----------------QKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAI 166
+ LL + K +GN L + F++T + +
Sbjct: 320 LALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSY----------KGSLEIL 369
Query: 167 AIHGDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRI 226
+ GD R +L + G +LV+TD+A+RG+D+P +H+ NFDLP+ + DY+HR
Sbjct: 370 LLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRA 429
Query: 227 GRTGRA----GKSGLATAFFSDKNIPLAKALVELM 257
GR GR K +A S++ L + ELM
Sbjct: 430 GRAGRKPFSDRKCIVANLITSEERFVLQRYENELM 464
>AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22) |
chr1:22090369-22092885 REVERSE
Length = 581
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 141 TLVFVETKRGADALEHWLSRSGFPAIAIHGDKVQVERERALKSFKIGVTPILVATDVASR 200
T+VF T +A+ L ++ H + ER L F+ + V TD A+R
Sbjct: 427 TMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFR-ETGGVFVCTDAAAR 485
Query: 201 GLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALVELMK 258
G+D+P+VSHV+ D D++HRIGRT RAG+ G T+ +++ N L +A+ E +K
Sbjct: 486 GVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIREAVK 543
>AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16) |
chr4:16631661-16634834 FORWARD
Length = 626
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 54/276 (19%)
Query: 1 FRNLEKGV-DILVATPGRLVDMIERGRVSLGMVK----YLALDEADRMLDMGFEPQIRKI 55
RN G+ +ILV+TP + G + V L LDEAD +L G+E +R +
Sbjct: 165 MRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV 224
Query: 56 VQQMDMPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVGSSTDLIAQRVEL--- 112
+ P Q +L SAT +++ L L + I LT+ + + V+
Sbjct: 225 TSII----PRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWI 280
Query: 113 -VQDVDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIHGD 171
DK H++ LL + L+F+ T L+ +L + G + ++G+
Sbjct: 281 SCSAQDKLLHILALLKLEVVQKK------ILIFINTIDMGFRLKLFLEKFGIKSAILNGE 334
Query: 172 KVQVERERALKSFKIGVTPILVATDVAS-------------------------------- 199
Q R L+ F G+ L+ATD S
Sbjct: 335 LPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEF 394
Query: 200 ---RGLDIPHVSHVVNFDLPKDIDDYVHRIGRTGRA 232
RG+D V V+NFD+P+ + Y+HRIGRTGRA
Sbjct: 395 GVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRA 430
>AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |
chr1:9708940-9713901 FORWARD
Length = 911
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 24/255 (9%)
Query: 1 FRNLEKGV-DILVATPGRL--VDMIERGRVSLGMVKYLALDEADRMLDM--GFEPQIRKI 55
R L++G+ +L +P RL V+ + R+SL V + +DEA + + F P ++
Sbjct: 351 LRKLKEGIIKVLFVSPERLLNVEFLSMFRMSLS-VSLVVVDEAHCVSEWSHNFRPSYMRL 409
Query: 56 VQQMDMPPPGERQTMLFSATFPHEIQSLASDFLSDYIFLTVGRVG-SSTDLIAQ-----R 109
+ +MLFS I ++ + + + + + ST+LI +
Sbjct: 410 -----------KASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDN 458
Query: 110 VELVQDVDKRNHLMELLHAQKASGNHGKRALTLVFVETKRGADALEHWLSRSGFPAIAIH 169
EL + N + +LL ++ R++ +V+ + + D + +L + A H
Sbjct: 459 FELSVSLSGANRMKDLLILMESPPYKEIRSI-IVYCKFQYETDMISKYLRDNNINAKGYH 517
Query: 170 GDKVQVERERALKSFKIGVTPILVATDVASRGLDIPHVSHVVNFDLPKDIDDYVHRIGRT 229
+R R +SF ++VAT GLD V V++F +P +++YV IGR
Sbjct: 518 SGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRA 577
Query: 230 GRAGKSGLATAFFSD 244
GR G+ F+ +
Sbjct: 578 GRDGRLSYCHLFYDN 592