Jatropha Genome Database

JcCA0293441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293441.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34160.1 | Symbols:  | nucleic acid binding | chr2:14426283-1...    99   5e-22
AT1G29250.1 | Symbols:  | nucleic acid binding | chr1:10223461-1...    97   2e-21
AT3G04620.1 | Symbols:  | nucleic acid binding | chr3:1255660-12...    89   8e-19

>AT2G34160.1 | Symbols:  | nucleic acid binding |
          chr2:14426283-14427220 FORWARD
          Length = 130

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%), Gaps = 1/59 (1%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          MEEIT+GVNN+ +   D  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGM I
Sbjct: 1  MEEITDGVNNMNL-ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAI 58


>AT1G29250.1 | Symbols:  | nucleic acid binding |
          chr1:10223461-10224592 REVERSE
          Length = 130

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 51/59 (86%), Gaps = 1/59 (1%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          MEEITEGVNN+ +   D  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGM I
Sbjct: 1  MEEITEGVNNMNL-AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAI 58


>AT3G04620.1 | Symbols:  | nucleic acid binding |
          chr3:1255660-1256739 REVERSE
          Length = 164

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 41/43 (95%)

Query: 17 DLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          + HKKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGM I
Sbjct: 33 ETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAI 75