Jatropha Genome Database

JcCA0291961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291961.20 + phase: 0 /partial
         (469 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04530.1 | Symbols:  | binding | chr1:1234456-1235895 REVERSE      140   3e-33
AT4G17940.1 | Symbols:  | binding | chr4:9965787-9966778 FORWARD      111   8e-25
AT5G20190.1 | Symbols:  | binding | chr5:6814093-6815171 FORWARD      103   2e-22
AT4G32340.1 | Symbols:  | EXPRESSED IN: 22 plant structures; EXP...    99   4e-21
AT1G80130.1 | Symbols:  | binding | chr1:30141250-30142478 REVERSE     95   7e-20
AT2G29670.1 | Symbols:  | binding | chr2:12682309-12684745 REVERSE     74   3e-13
AT1G07280.3 | Symbols:  | binding | chr1:2238505-2240991 FORWARD       66   5e-11
AT1G07280.2 | Symbols:  | binding | chr1:2238505-2240991 FORWARD       66   5e-11
AT1G07280.1 | Symbols:  | binding | chr1:2238505-2240991 FORWARD       66   5e-11
AT3G47080.1 | Symbols:  | binding | chr3:17338415-17340129 REVERSE     63   5e-10

>AT1G04530.1 | Symbols:  | binding | chr1:1234456-1235895 REVERSE
          Length = 310

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 163/352 (46%), Gaps = 50/352 (14%)

Query: 90  MLSSVPSFSIF-NVNDELEDAENNGGEREGLMRTVTIGESIEAKGDEEFTFGK---KSMG 145
           ML S  S SI+ +  D  +  +   G  E L RTVTIG++I+     EF+F K   +  G
Sbjct: 1   MLKSEASLSIYCDSGDGFKSEDPVTGIEENLERTVTIGDAIDGG---EFSFAKHKEEDSG 57

Query: 146 LIXXXXXXXXXXDLN-GIENINLDEVKEPVSPPMYLASXXXXXXXXXXXXXXXXXXXMAL 204
                        L  G+ +    E++ P SPPM+LA+                     L
Sbjct: 58  EGERGVFEEVIKKLGIGVRDELGFEIERPPSPPMHLAAGLGIDKFDLYGSEIK----FDL 113

Query: 205 PNFDESGDLEEYYKRMIDEYPCHPLFLANYAQLLQSKGDLHGAEEYYHRASLADPGDSEI 264
           P +D+  +  +YYK M++EYP HPL L NYA+ L+ KGDL GAEEYYH+ ++ +P D   
Sbjct: 114 PGYDDK-NCGDYYKGMLEEYPLHPLLLKNYAKFLEYKGDLSGAEEYYHKCTVVEPSDGVA 172

Query: 265 LLKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLWXXXXXXXXXXQQLQHI 324
           L  Y +L  +LH ++  A+S F+ AV+ +P DS VLAAYASFLW           ++   
Sbjct: 173 LANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW-----------EINAD 221

Query: 325 KVEEEEHLTRLVNSAANQD-FELLQLPPSMLAIDVADHATSDIDKGIDVDEYYKRMLEEN 383
             +E++      +S   +D FE           D A    S + K  D +          
Sbjct: 222 DDDEDDDEDDDESSGQGKDEFE----------ADAAGKGKSSLSKTEDGE---------- 261

Query: 384 PYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
                 L  YA+  +    D   A  Y+ +A+   P D  I+  YA+ +WE+
Sbjct: 262 -----TLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLWEI 308



 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 84/132 (63%), Gaps = 14/132 (10%)

Query: 347 LQLPPS-------MLAIDVADHATSDID---KGID---VDEYYKRMLEENPYSSLLLSNY 393
           ++ PPS        L ID  D   S+I     G D     +YYK MLEE P   LLL NY
Sbjct: 83  IERPPSPPMHLAAGLGIDKFDLYGSEIKFDLPGYDDKNCGDYYKGMLEEYPLHPLLLKNY 142

Query: 394 AQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWELHRDHDKASSYFERAVQAK 453
           A+FL + KGDLSGAEEYY +  ++EP DG  ++ Y +LV +LH+D  KA SYFERAVQA 
Sbjct: 143 AKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQAS 201

Query: 454 PEDSHVLAAYAS 465
           P+DS VLAAYAS
Sbjct: 202 PDDSIVLAAYAS 213



 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 375 YYKRMLEENPYSSLLLSNYAQFLY--------------------QSKGDLSGAEEYYSRA 414
           Y++R ++ +P  S++L+ YA FL+                    Q K +         ++
Sbjct: 193 YFERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKS 252

Query: 415 LLIEPGDGEIMSRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
            L +  DGE + RYAK  W ++ DH+KA  YFE+AV+A P DS +L  YA
Sbjct: 253 SLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYA 302


>AT4G17940.1 | Symbols:  | binding | chr4:9965787-9966778 FORWARD
          Length = 274

 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 64/93 (68%)

Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
           + +YY+ ML  NP +SLLL NY +FLY+ + D  GAEEYY RA+L  PGDGE +S Y +L
Sbjct: 150 IGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRL 209

Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           +WE  RD  +A  YF++AV A P D  VL +YA
Sbjct: 210 IWETKRDEKRAQGYFDQAVNASPNDCMVLGSYA 242



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 213 LEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAKL 271
           + +YY+ M+   P + L L NY + L + + D  GAEEYY RA L +PGD E L  Y +L
Sbjct: 150 IGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRL 209

Query: 272 EWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
            W+   ++  A   F  AV  +P D  VL +YA F+W
Sbjct: 210 IWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246


>AT5G20190.1 | Symbols:  | binding | chr5:6814093-6815171 FORWARD
          Length = 290

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 68/94 (72%)

Query: 371 DVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAK 430
           + D +Y++M+E NP + + LSNYA+FL + + D   AEEY  RA+L+ P DG +++ YA+
Sbjct: 155 NTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAE 214

Query: 431 LVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           LVW++H+D  +A +YF +AV A PED +V A+YA
Sbjct: 215 LVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYA 248



 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 216 YYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILLKYAKLEWQ 274
           +Y++MI+  P + +FL+NYA+ L+  + D   AEEY  RA L  P D  +L  YA+L W+
Sbjct: 159 HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK 218

Query: 275 LHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           +H +   A + F  AV  AP+D  V A+YA FLW
Sbjct: 219 IHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252


>AT4G32340.1 | Symbols:  | EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: binding (TAIR:AT1G80130.1);
           Has 2680 Blast hits to 1282 proteins in 184 species:
           Archae - 2; Bacteria - 433; Metazoa - 1247; Fungi - 71;
           Plants - 657; Viruses - 13; Other Eukaryotes - 257
           (source: NCBI BLink). | chr4:15612741-15614219 REVERSE
          Length = 238

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPG-DGEIMSRYAK 430
           VD YY+ M++  P  +LLLSNYA+FL + KGD   AEEY  RA+L E G DGE++S Y  
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query: 431 LVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           L+W+ H D  +A SY+++AVQ+ P+D +VLA+YA
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYA 203



 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 213 LEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPG-DSEILLKYAK 270
           ++ YY+ MI  YP   L L+NYA+ L+  KGD   AEEY  RA L++ G D E+L  Y  
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query: 271 LEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           L W+ H +   A S +  AV+ +P D  VLA+YA FLW
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207


>AT1G80130.1 | Symbols:  | binding | chr1:30141250-30142478 REVERSE
          Length = 305

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 63/93 (67%)

Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
            D YY+ M++ NP +SLL  NYA+FL + KGD+  AEEY  RA+L    DG ++S YA L
Sbjct: 165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           +   H+D  +A SY+++AV+  PED +V A+YA
Sbjct: 225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYA 257



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILLKYAKLE 272
           + YY+ MID  P + L   NYA+ L+  KGD+  AEEY  RA L +  D  +L  YA L 
Sbjct: 166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
              H ++  A S +K AV+++P+D  V A+YA FLW
Sbjct: 226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261


>AT2G29670.1 | Symbols:  | binding | chr2:12682309-12684745 REVERSE
          Length = 536

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%)

Query: 376 YKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
           Y+  L + P + LLL+NYAQFLY    D   AEEY+ RA+ +EP D E  S+YA  +W  
Sbjct: 424 YQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFLWRA 483

Query: 436 HRDHDKASSYFERAVQAKPEDSHVLAAYA 464
             D   A   F  A+ A P +S+  A YA
Sbjct: 484 RDDLWAAEETFLEAIDADPTNSYYAANYA 512



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQSKGDLHG-AEEYYHRASLADPGDSEILLKYAKLE 272
           E  Y+  + + P +PL LANYAQ L    + H  AEEY+ RA   +P D+E   KYA   
Sbjct: 421 ELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFL 480

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           W+   +   A   F  A+   P +S   A YA+FLW
Sbjct: 481 WRARDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516


>AT1G07280.3 | Symbols:  | binding | chr1:2238505-2240991 FORWARD
          Length = 552

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 376 YKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
           Y+  L + P + LLL+NYAQFLY    D   AE+Y+ RA   EP D E +++YA  +W  
Sbjct: 439 YQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRA 498

Query: 436 HRDHDKASSYFERAVQAKPEDSHVLAAYA 464
             D  +A   +  A+ A P +S   A YA
Sbjct: 499 RNDIWRAEETYLEAISADPTNSVYSANYA 527



 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQ-SKGDLHGAEEYYHRASLADPGDSEILLKYAKLE 272
           E  Y+  + + P + L LANYAQ L     D   AE+Y+ RA+ A+P D+E L KYA   
Sbjct: 436 ELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFL 495

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           W+  ++   A   +  A+   P +S   A YA FLW
Sbjct: 496 WRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531


>AT1G07280.2 | Symbols:  | binding | chr1:2238505-2240991 FORWARD
          Length = 552

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 376 YKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
           Y+  L + P + LLL+NYAQFLY    D   AE+Y+ RA   EP D E +++YA  +W  
Sbjct: 439 YQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRA 498

Query: 436 HRDHDKASSYFERAVQAKPEDSHVLAAYA 464
             D  +A   +  A+ A P +S   A YA
Sbjct: 499 RNDIWRAEETYLEAISADPTNSVYSANYA 527



 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQ-SKGDLHGAEEYYHRASLADPGDSEILLKYAKLE 272
           E  Y+  + + P + L LANYAQ L     D   AE+Y+ RA+ A+P D+E L KYA   
Sbjct: 436 ELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFL 495

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           W+  ++   A   +  A+   P +S   A YA FLW
Sbjct: 496 WRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531


>AT1G07280.1 | Symbols:  | binding | chr1:2238505-2240991 FORWARD
          Length = 552

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 376 YKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
           Y+  L + P + LLL+NYAQFLY    D   AE+Y+ RA   EP D E +++YA  +W  
Sbjct: 439 YQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRA 498

Query: 436 HRDHDKASSYFERAVQAKPEDSHVLAAYA 464
             D  +A   +  A+ A P +S   A YA
Sbjct: 499 RNDIWRAEETYLEAISADPTNSVYSANYA 527



 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQ-SKGDLHGAEEYYHRASLADPGDSEILLKYAKLE 272
           E  Y+  + + P + L LANYAQ L     D   AE+Y+ RA+ A+P D+E L KYA   
Sbjct: 436 ELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFL 495

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           W+  ++   A   +  A+   P +S   A YA FLW
Sbjct: 496 WRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531


>AT3G47080.1 | Symbols:  | binding | chr3:17338415-17340129 REVERSE
          Length = 515

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 326 VEEEEHLTRLVNSAANQDFELLQLPPSMLAIDVADHATSDIDKGIDVDEYYKRMLEENPY 385
           VEE + +    +S+ ++D  L  + P    I++ D+A          +  YK  L + P 
Sbjct: 362 VEEADQMQ---DSSVDRDMRLRLVSPITARIELDDYANY-----TRTELLYKIGLAQEPD 413

Query: 386 SSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWELHRDHDKASSY 445
           + LLL+NYAQFLY    D   AE  + +A+  E  D E  S+YA  +W++  D   A   
Sbjct: 414 NHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFLWKVRNDLWAAEEN 473

Query: 446 FERAVQAKPEDSHVLAAYA 464
           F  A+ A P +S   A YA
Sbjct: 474 FLEAISADPTNSFYAANYA 492



 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 214 EEYYKRMIDEYPCHPLFLANYAQLLQ-SKGDLHGAEEYYHRASLADPGDSEILLKYAKLE 272
           E  YK  + + P + L LANYAQ L     D   AE  + +A  ++  D+E   KYA   
Sbjct: 401 ELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFL 460

Query: 273 WQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           W++ ++   A  NF  A+   P +S   A YA+FLW
Sbjct: 461 WKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496