Jatropha Genome Database

JcCA0289691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289691.10 - phase: 0 /pseudo/partial
         (463 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65070.1 | Symbols:  | DNA mismatch repair MutS family protei...   104   1e-22

>AT1G65070.1 | Symbols:  | DNA mismatch repair MutS family protein |
           chr1:24173132-24176244 REVERSE
          Length = 857

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 208 LLHFMQKLCKSTTRRVPALMAXXXXXXXXXXXXXXSQIEIVVHNFENQLRKASPDQFNSL 267
           L H ++       +R  AL+               S++E +V  FE+QL     DQ+NSL
Sbjct: 622 LYHELEHESHDLDKRERALLKKETQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSL 681

Query: 268 IRKSESAIASIVEAHCPAESLPANEADSSSYTPQLGEEVHVKGLGDKVVTVVEALG-NDE 326
           I K+E A+A I+EA CP +   + E + S Y+PQ GE+V V GLGDK+ TVVE  G +D+
Sbjct: 682 ILKTEEAVAEIIEACCPMDP-DSLEEEYSDYSPQAGEKVLVTGLGDKLGTVVEEPGDDDD 740

Query: 327 TILVQYGKIRVCVKKSDIRSIQANKRRDSTHLVPRLRKQ 365
           T+LVQ+GKIRV +KK DI+ +  +    +++   R ++Q
Sbjct: 741 TVLVQHGKIRVRIKKKDIKPLPRSTSSQTSNRSLRSKRQ 779