Jatropha Genome Database
- JcCA0289561.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0289561.10 + phase: 1 /pseudo/partial
(355 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02300.1 | Symbols: | regulator of chromosome condensation (... 388 e-108
AT5G63860.1 | Symbols: UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin... 102 4e-22
AT5G12350.1 | Symbols: | Ran GTPase binding / chromatin binding... 89 6e-18
AT5G48330.2 | Symbols: | regulator of chromosome condensation (... 88 8e-18
AT5G19420.1 | Symbols: | Ran GTPase binding / chromatin binding... 87 2e-17
AT1G69710.1 | Symbols: | zinc finger protein, putative / regula... 87 2e-17
AT3G02510.1 | Symbols: | regulator of chromosome condensation (... 86 3e-17
AT3G55580.1 | Symbols: | regulator of chromosome condensation (... 86 5e-17
AT5G48330.1 | Symbols: | regulator of chromosome condensation (... 84 1e-16
AT5G16040.1 | Symbols: | regulator of chromosome condensation (... 82 6e-16
AT1G65920.1 | Symbols: | regulator of chromosome condensation (... 82 6e-16
AT3G03790.1 | Symbols: | ankyrin repeat family protein / regula... 81 8e-16
AT3G03790.2 | Symbols: | ankyrin repeat family protein / regula... 81 9e-16
AT4G14368.1 | Symbols: | zinc ion binding | chr4:8274313-827881... 80 1e-15
AT1G76950.1 | Symbols: PRAF1 | PRAF1; Ran GTPase binding / chrom... 80 2e-15
AT5G60870.1 | Symbols: | regulator of chromosome condensation (... 79 6e-15
AT5G42140.1 | Symbols: | zinc finger protein, putative / regula... 77 1e-14
AT3G53830.1 | Symbols: | regulator of chromosome condensation (... 75 4e-14
AT3G02510.2 | Symbols: | regulator of chromosome condensation (... 75 5e-14
AT5G60870.2 | Symbols: | regulator of chromosome condensation (... 75 9e-14
AT1G27060.1 | Symbols: | regulator of chromosome condensation (... 73 2e-13
AT3G23270.1 | Symbols: | regulator of chromosome condensation (... 73 3e-13
AT5G60870.3 | Symbols: | regulator of chromosome condensation (... 72 7e-13
AT3G47660.1 | Symbols: | Ran GTPase binding / chromatin binding... 72 7e-13
AT3G15430.2 | Symbols: | regulator of chromosome condensation (... 67 2e-11
AT3G15430.1 | Symbols: | regulator of chromosome condensation (... 67 2e-11
AT5G08710.1 | Symbols: | regulator of chromosome condensation (... 66 3e-11
AT3G26100.2 | Symbols: | regulator of chromosome condensation (... 63 3e-10
AT3G26100.1 | Symbols: | regulator of chromosome condensation (... 62 4e-10
AT1G19880.1 | Symbols: | regulator of chromosome condensation (... 61 1e-09
AT5G11580.1 | Symbols: | UVB-resistance protein-related / regul... 57 2e-08
>AT3G02300.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:461551-463929 FORWARD
Length = 471
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/311 (65%), Positives = 246/311 (79%), Gaps = 10/311 (3%)
Query: 1 ANEFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVW 60
ANE+GQLGDGTE GRK+PK+V QL++EFVK VSCGA CTAAIAEPRENDGT+S SRLWVW
Sbjct: 87 ANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAIAEPRENDGTLSTSRLWVW 146
Query: 61 GQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLG---- 116
GQNQ + L F+G +T + + + ++ S G ++ W G
Sbjct: 147 GQNQGSNLPRL--FSGAFPATTAIRQVSCGTAHVVAL----SEEGLLQAWGYNEQGQLGR 200
Query: 117 GVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLG 176
GVTCEGLQ R+INA+AKFLDEAPELVKI Q+SCGEYHTAA+S+ GEVYTWGLG++GQLG
Sbjct: 201 GVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLG 260
Query: 177 HTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
H SLQSGDKEL+PRRVV LDG+ +K+VACGGVHTCA++ +GALYAWG GQ GQLGLGPQ+
Sbjct: 261 HVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEGALYAWGGGQAGQLGLGPQS 320
Query: 237 GSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQK 296
G F + + SE LRN+P LV+P V+LVACGHSHTLV +R+GRI GWGYNSYGQAAN+K
Sbjct: 321 GFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEK 380
Query: 297 TTYAWYPSPVD 307
++YAWYPSPVD
Sbjct: 381 SSYAWYPSPVD 391
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 30/153 (19%)
Query: 148 VSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGG 207
+SCG HTAA++ G ++ WG GQLG + + G K P++V L F+K V+CG
Sbjct: 66 ISCGREHTAAVASDGSLFAWGANEYGQLGDGT-EVGRKH--PKKVKQLQSEFVKFVSCGA 122
Query: 208 VHTCAVTE---------KGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVL 258
T A+ E L+ WG Q L P+ S +F PA
Sbjct: 123 FCTAAIAEPRENDGTLSTSRLWVWGQNQGSNL---PRLFSGAF------------PA--- 164
Query: 259 PNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
++ V+CG +H + +G + WGYN GQ
Sbjct: 165 TTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQ 197
>AT5G63860.1 | Symbols: UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin
binding / guanyl-nucleotide exchange factor |
chr5:25554821-25558587 REVERSE
Length = 440
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 133/299 (44%), Gaps = 44/299 (14%)
Query: 3 EFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQ 62
E GQLG G E R P ++ L+ + SV+CGA T A ++ S ++ WG
Sbjct: 43 EDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ--------SGMEVYSWGW 94
Query: 63 NQPILINH---LLIFTGIKFSTFILGGLQTKYDYPSSVLWCG-------SCGGFIRGWPT 112
+ H +FT + L G++ K + CG + G ++ W
Sbjct: 95 GDFGRLGHGNSSDLFTPLPIKA--LHGIRIKQ------IACGDSHCLAVTMEGEVQSWGR 146
Query: 113 TSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNV 172
G + + + + F E ++I V+ G HTAA++E G++Y WG G
Sbjct: 147 NQNGQLGLGDTEDSLVPQKIQAF-----EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY 201
Query: 173 GQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
G LG L L+P RV + G + VACG HT +V+ GALY +G + GQLG
Sbjct: 202 GNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGH 258
Query: 233 GPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
G IP E+ + + ++ G HT+ DG+++GWG+N +GQ
Sbjct: 259 GDLED--HLIPHKLEALSNSF--------ISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 49/317 (15%)
Query: 3 EFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCG-AHCTAAIAEPREND-GTISKSRLWVW 60
+FG+LG G P + L +K ++CG +HC A E G +L +
Sbjct: 96 DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG 155
Query: 61 GQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTC 120
++ + F GI+ G T + G + GW G +
Sbjct: 156 DTEDSLVPQKIQAFEGIRIKMVAAGAEHTA---------AVTEDGDLYGWGWGRYGNLGL 206
Query: 121 EGLQGARLINAFAKFLDEAPELV------KITQVSCGEYHTAAISEKGEVYTWGLGNVGQ 174
G + RL+ PE V K++ V+CG HT ++S G +YT+G GQ
Sbjct: 207 -GDRTDRLV----------PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 255
Query: 175 LGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGP 234
LGH L+ L+P ++ AL FI ++ G HT A+T G LY WG + GQ+G+G
Sbjct: 256 LGHGDLE---DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312
Query: 235 QTGSFSFI----PSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
S + P D + V V+CG HTL + WG + G
Sbjct: 313 NLDQCSPVQVRFPDDQK--------------VVQVSCGWRHTLAVTERNNVFAWGRGTNG 358
Query: 291 QAANQKTTYAWYPSPVD 307
Q ++ +P ++
Sbjct: 359 QLGIGESVDRNFPKIIE 375
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 144 KITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPR--RVVALDGIFIK 201
K+ +S G H+ A+ V +WG G GQLGH GD E P ++ ALDG I
Sbjct: 16 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIV 70
Query: 202 DVACGGVHTCAVTEKGA-LYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
V CG HT A ++ G +Y+WG G G+LG G + F+ +P + +R
Sbjct: 71 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR--------- 121
Query: 261 GVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
++ +ACG SH L +G + WG N GQ T + P +
Sbjct: 122 -IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 166
>AT5G12350.1 | Symbols: | Ran GTPase binding / chromatin binding /
zinc ion binding | chr5:3995789-4000545 FORWARD
Length = 1075
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 29/168 (17%)
Query: 141 ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKE--LLPRRVVALDGI 198
E + ++ ++CG YHTA ++ G+++T+G G G LGH GDK+ +PR V +L G+
Sbjct: 411 EGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGH-----GDKKSVFIPREVDSLKGL 465
Query: 199 FIKDVACGGVHTCAVTE------------KGALYAWGSGQVGQLGLGPQTGSFSFIPSDS 246
ACG HT AV E G L+ WG G G+LG G + +P+
Sbjct: 466 RTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKL--VPT-- 521
Query: 247 ESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAAN 294
+ ALV PN Q VACGHS T+ G ++ G YGQ N
Sbjct: 522 -----CVAALVEPNFCQ-VACGHSLTVALTTSGHVYTMGSPVYGQLGN 563
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 18/173 (10%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH---TSLQSGDKELLPRRVVA 194
E+ ++ + ++CG H ++++GE ++WG + G+LGH +++Q P+ + A
Sbjct: 303 ESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQ------PKLIDA 356
Query: 195 LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIP 254
L+ I+ VACG H+CAVT G LY WG G G LG G + ++P L I
Sbjct: 357 LNTTNIELVACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVS--HWVPKRVNFLLEGI- 413
Query: 255 ALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
V +ACG HT V G++ +G ++G + + P VD
Sbjct: 414 ------HVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVD 460
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 26/161 (16%)
Query: 115 LGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQ 174
LG +Q +LI+A I V+CGE+H+ A++ G++YTWG G+ G
Sbjct: 340 LGHGVDSNIQQPKLIDAL--------NTTNIELVACGEFHSCAVTLSGDLYTWGKGDFGV 391
Query: 175 LGHTSLQSGDKELLPRRV-VALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLG 233
LGH + S +P+RV L+GI + +ACG HT VT G L+ +G G G LG G
Sbjct: 392 LGHGNEVS---HWVPKRVNFLLEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHG 448
Query: 234 PQTGSFSFIPSDSESF--LRNIPALVLPNGVQLVACGHSHT 272
+ FIP + +S LR + A ACG HT
Sbjct: 449 DKKS--VFIPREVDSLKGLRTVRA----------ACGVWHT 477
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 127/318 (39%), Gaps = 74/318 (23%)
Query: 5 GQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQ 64
G+LG G + + PK +D L ++ V+CG + A+ T+S L+ WG+
Sbjct: 338 GRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAV--------TLSGD-LYTWGKGD 388
Query: 65 --------------PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWC---GSCGGFI 107
P +N LL GI S+ G T + L+ G+ G
Sbjct: 389 FGVLGHGNEVSHWVPKRVNFLL--EGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLG 446
Query: 108 RGWPTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISE------- 160
G + + L+G R + A +CG +HTAA+ E
Sbjct: 447 HGDKKSVFIPREVDSLKGLRTVRA-----------------ACGVWHTAAVVEVMVGSSS 489
Query: 161 -----KGEVYTWGLGNVGQLGHTSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCAV 213
G+++TWG G+ G+LGH G+KE L+P V AL VACG T A+
Sbjct: 490 SSNCSSGKLFTWGDGDKGRLGH-----GNKEPKLVPTCVAALVEPNFCQVACGHSLTVAL 544
Query: 214 TEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTL 273
T G +Y GS GQLG G P+ E L + V+ +ACG H
Sbjct: 545 TTSGHVYTMGSPVYGQLGNSHADGK---TPNRVEGKLHK-------SFVEEIACGAYHVA 594
Query: 274 VSLRDGRIHGWGYNSYGQ 291
V ++ WG S G+
Sbjct: 595 VLTSRTEVYTWGKGSNGR 612
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 124/307 (40%), Gaps = 64/307 (20%)
Query: 3 EFGQLGDGTEEGRKYPKRVD-QLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWG 61
+FG LG G E PKRV+ LE V S++CG + TA + S +L+ +G
Sbjct: 388 DFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAVVT---------SAGQLFTFG 438
Query: 62 QNQPILINHLLIFTGIKFSTFI------LGGLQTKYD-----YPSSVLWC--------GS 102
++ H G K S FI L GL+T + ++V+
Sbjct: 439 DGTFGVLGH-----GDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNC 493
Query: 103 CGGFIRGWPTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKG 162
G + W G + G + +L+ L E QV+CG T A++ G
Sbjct: 494 SSGKLFTWGDGDKGRLG-HGNKEPKLVPTCVAALVEP----NFCQVACGHSLTVALTTSG 548
Query: 163 EVYTWGLGNVGQLGHTSLQSGDKELLPRRVV-ALDGIFIKDVACGGVHTCAVTEKGALYA 221
VYT G GQLG++ P RV L F++++ACG H +T + +Y
Sbjct: 549 HVYTMGSPVYGQLGNSHADGK----TPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYT 604
Query: 222 WGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALV---LPNGVQLVACGHSHTLVSLRD 278
WG G G+LG G D + RN P LV V+ +ACG + T
Sbjct: 605 WGKGSNGRLGHG-----------DVDD--RNSPTLVESLKDKQVKSIACGTNFTAAVC-- 649
Query: 279 GRIHGWG 285
IH W
Sbjct: 650 --IHRWA 654
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEP---RENDGTISKSRLWVW 60
FG LG G ++ P+ VD L+ +CG TAA+ E + S +L+ W
Sbjct: 442 FGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTW 501
Query: 61 GQNQPILINH-----LLIFTGIKFSTFILGGL-QTKYDYPSSVLWCGSCGGFIRGWPTT- 113
G + H L+ T + + + Q + +V S + G P
Sbjct: 502 GDGDKGRLGHGNKEPKLVPTCV--AALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYG 559
Query: 114 SLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVG 173
LG +G R+ K + +++CG YH A ++ + EVYTWG G+ G
Sbjct: 560 QLGNSHADGKTPNRVEGKLHKSF--------VEEIACGAYHVAVLTSRTEVYTWGKGSNG 611
Query: 174 QLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
+LGH + D P V +L +K +ACG T AV ++ W SG
Sbjct: 612 RLGHGDV---DDRNSPTLVESLKDKQVKSIACGTNFTAAV----CIHRWASG 656
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 187 LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDS 246
LLP+ + + + ++++ACGG H VT++G ++WG G+LG G + S+
Sbjct: 297 LLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHG--------VDSNI 348
Query: 247 ESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
+ + I AL N ++LVACG H+ G ++ WG +G + W P V
Sbjct: 349 QQ-PKLIDALNTTN-IELVACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRV 406
Query: 307 D 307
+
Sbjct: 407 N 407
>AT5G48330.2 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:19585989-19587729 FORWARD
Length = 454
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVA 204
I+ +S G YH+ A++ GE++ WG + GQLG + S D P+RV L+ + ++
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSRDSRSEPKRVEGLENVNVQAAF 143
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL 264
GV + A+ + G+L+ WG + GQLGLG I + S + N+ A V
Sbjct: 144 ASGVVSAAIGDDGSLWVWGRSKRGQLGLGN-----GIIEARVPSRVENLAA----EHVVK 194
Query: 265 VACGHSHTLVSLRDGRIHGWGYNSYGQAAN 294
V+ G H L DG++ GWGY + G+ N
Sbjct: 195 VSLGWGHALALTVDGKVFGWGYVADGRVGN 224
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 143 VKITQ----VSCGEYHTAAISEKGE--VYTWGLGNVGQLGHTSLQSGDKELLPRRVVALD 196
V IT+ ++ G H+ AI +GE + +WG QLG G E LPR V D
Sbjct: 329 VDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGR-----GKPENLPREVEGFD 383
Query: 197 GIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
G V+ G VH+ VTEKG + WG G+ G+LGLG +
Sbjct: 384 GESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSS 423
>AT5G19420.1 | Symbols: | Ran GTPase binding / chromatin binding /
zinc ion binding | chr5:6547945-6552866 REVERSE
Length = 1105
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 124/304 (40%), Gaps = 92/304 (30%)
Query: 5 GQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQ 64
G+LG G + ++PK +D L ++ V+CG + + A+ T+S L+ WG+
Sbjct: 342 GRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAV--------TLSGD-LYTWGK-- 390
Query: 65 PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEGLQ 124
G F G+ G +
Sbjct: 391 ---------------------------------------GDF----------GILGHGNE 401
Query: 125 GARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGD 184
+ + FL E + ++ ++CG YHTA ++ G+++T+G G G LGH GD
Sbjct: 402 VSHWVPKRVNFLMEG---IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGH-----GD 453
Query: 185 KE--LLPRRVVALDGIFIKDVACGGVHTCAVTE------------KGALYAWGSGQVGQL 230
++ +PR V +L G+ ACG HT AV E G L+ WG G +L
Sbjct: 454 RKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRL 513
Query: 231 GLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
G G + +P+ + ALV PN Q VACGHS T+ G ++ G YG
Sbjct: 514 GHGDKEPKL--VPT-------CVAALVEPNFCQ-VACGHSLTVALTTSGHVYTMGSPVYG 563
Query: 291 QAAN 294
Q N
Sbjct: 564 QLGN 567
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 18/173 (10%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH---TSLQSGDKELLPRRVVA 194
E+ ++ + ++CG H ++++GE ++WG + G+LGH +++Q P+ + A
Sbjct: 307 ESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQH------PKLIDA 360
Query: 195 LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIP 254
L+ I+ VACG H+CAVT G LY WG G G LG G + ++P + I
Sbjct: 361 LNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVS--HWVPKRVNFLMEGI- 417
Query: 255 ALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
V +ACG HT V G++ +G ++G + + P VD
Sbjct: 418 ------HVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVD 464
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 124/302 (41%), Gaps = 76/302 (25%)
Query: 3 EFGQLGDGTEEGRKYPKRVDQL-EAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWG 61
+FG LG G E PKRV+ L E V S++CG + TA + S +L+ +G
Sbjct: 392 DFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVT---------SAGQLFTFG 442
Query: 62 QNQPILINHLLIFTGIKFSTFI------LGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSL 115
++ H G + S FI L GL+T +CG W T ++
Sbjct: 443 DGTFGVLGH-----GDRKSVFIPREVDSLKGLRTVR---------AACGV----WHTAAV 484
Query: 116 GGVTCEGLQGARLINAFAKFL------------DEAPELV----------KITQVSCGEY 153
V G + ++ F D+ P+LV QV+CG
Sbjct: 485 VEVMV-GSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPNFCQVACGHS 543
Query: 154 HTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAV 213
T A++ G VYT G GQLG+ D ++ R L F++++ACG H +
Sbjct: 544 LTVALTTSGHVYTMGSPVYGQLGNPH---ADGKVPTRVDGKLHKSFVEEIACGAYHVAVL 600
Query: 214 TEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALV---LPNGVQLVACGHS 270
T + +Y WG G G+LG G D++ RN P LV V+ +ACG +
Sbjct: 601 TSRTEVYTWGKGSNGRLGHG-----------DADD--RNSPTLVESLKDKQVKSIACGSN 647
Query: 271 HT 272
T
Sbjct: 648 FT 649
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 27/232 (11%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEP---RENDGTISKSRLWVW 60
FG LG G + P+ VD L+ +CG TAA+ E + S +L+ W
Sbjct: 446 FGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTW 505
Query: 61 GQNQPILINH-----LLIFTGIKFSTFILGGL-QTKYDYPSSVLWCGSCGGFIRGWPTT- 113
G + H L+ T + + + Q + +V S + G P
Sbjct: 506 GDGDKSRLGHGDKEPKLVPTCV--AALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYG 563
Query: 114 SLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVG 173
LG +G R+ K + +++CG YH A ++ + EVYTWG G+ G
Sbjct: 564 QLGNPHADGKVPTRVDGKLHKSF--------VEEIACGAYHVAVLTSRTEVYTWGKGSNG 615
Query: 174 QLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
+LGH D P V +L +K +ACG T AV L+ W SG
Sbjct: 616 RLGHG---DADDRNSPTLVESLKDKQVKSIACGSNFTAAV----CLHKWASG 660
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 178 TSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTG 237
+SL+ LLP+ + + + ++++ACGG H VT++G ++WG G+LG G +
Sbjct: 292 SSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSN 351
Query: 238 SFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKT 297
+ I AL N ++LVACG H+ G ++ WG +G +
Sbjct: 352 V---------QHPKLIDALNTTN-IELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNE 401
Query: 298 TYAWYPSPVD 307
W P V+
Sbjct: 402 VSHWVPKRVN 411
>AT1G69710.1 | Symbols: | zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein |
chr1:26222509-26226530 FORWARD
Length = 1028
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVA 204
++ V+CG +HTA ++ G+++T+G G G LGH +S +PR V +L G+ + VA
Sbjct: 396 VSDVACGPWHTAVVASSGQLFTFGDGTFGALGHGDRRSTS---VPREVESLIGLIVTKVA 452
Query: 205 CGGVHTCAVTE-------------KGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLR 251
CG HT AV E +G ++ WG G+ GQLG G +D++
Sbjct: 453 CGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHG---------DNDTKLLPE 503
Query: 252 NIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD**CD 311
+ +L N Q VACGHS T+ G ++ G +YGQ N T +P V+ D
Sbjct: 504 CVISLTNENICQ-VACGHSLTVSRTSRGHVYTMGSTAYGQLGN-PTAKGNFPERVE--GD 559
Query: 312 TIERFADRGCC 322
+E + C
Sbjct: 560 IVEASVEEIAC 570
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 145 ITQVSCGEYHTAAI-------------SEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRR 191
+T+V+CG +HTAA+ S +G+V+TWG G GQLGH D +LLP
Sbjct: 448 VTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGD---NDTKLLPEC 504
Query: 192 VVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLR 251
V++L I VACG T + T +G +Y GS GQLG P+ +F
Sbjct: 505 VISLTNENICQVACGHSLTVSRTSRGHVYTMGSTAYGQLG----------NPTAKGNFPE 554
Query: 252 NIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
+ ++ V+ +ACG H V I+ WG GQ
Sbjct: 555 RVEGDIVEASVEEIACGSYHVAVLTSKSEIYTWGKGLNGQ 594
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 29/160 (18%)
Query: 148 VSCGEYHTAAISEKGEVYTWGLG--NVGQLGHTSLQSGDKELLPRRVVA-LDGIFIKDVA 204
++CG++HT AI++ G++Y+WG G NV LGH + S +P+RV L G+++ DVA
Sbjct: 344 LACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSC---WIPKRVTGDLQGLYVSDVA 400
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL 264
CG HT V G L+ +G G G LG G + + +P + ES + I V
Sbjct: 401 CGPWHTAVVASSGQLFTFGDGTFGALGHGDRRS--TSVPREVESLIGLI--------VTK 450
Query: 265 VACG--HSHTLVSLRD-----------GRIHGWGYNSYGQ 291
VACG H+ +V + + G++ WG GQ
Sbjct: 451 VACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQ 490
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDG 197
E+ ++ ++CG+ H ++++GE+++WG G G+LGH K P+ + ++ G
Sbjct: 282 ESTIVLDAQNIACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQK---PKFISSVRG 338
Query: 198 IFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALV 257
+ K +ACG HTCA+T+ G LY+WG G LG S +IP L+ +
Sbjct: 339 LGFKSLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGL---- 394
Query: 258 LPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
V VACG HT V G++ +G ++G
Sbjct: 395 ---YVSDVACGPWHTAVVASSGQLFTFGDGTFG 424
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 26/222 (11%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAE----PRENDGTISKSRLWV 59
FG LG G P+ V+ L V V+CG TAA+ E E + S+ +++
Sbjct: 423 FGALGHGDRRSTSVPREVESLIGLIVTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFT 482
Query: 60 WGQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVT 119
WG + + H G + + + + + + CG R TS G V
Sbjct: 483 WGDGEKGQLGH-----GDNDTKLLPECVISLTNENICQVACGHSLTVSR----TSRGHVY 533
Query: 120 CEGLQG-ARLINAFAKFLDEAPELVK-------ITQVSCGEYHTAAISEKGEVYTWGLGN 171
G +L N AK PE V+ + +++CG YH A ++ K E+YTWG G
Sbjct: 534 TMGSTAYGQLGNPTAK--GNFPERVEGDIVEASVEEIACGSYHVAVLTSKSEIYTWGKGL 591
Query: 172 VGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAV 213
GQLGH ++++ + P V L +K + CG T +
Sbjct: 592 NGQLGHGNVENKRE---PAVVGFLREKQVKAITCGSNFTAVI 630
>AT3G02510.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:522086-524536 REVERSE
Length = 393
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 142 LVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIK 201
L + ++ G +H A+ E G + WG GQLG Q P V LD + +
Sbjct: 195 LENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSH---PVPVQGLDDLTLV 251
Query: 202 DVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNG 261
D+A GG H+ A+T+KG +Y WG G+ G+LGLG S +P L+
Sbjct: 252 DIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVN--------LLAEED 303
Query: 262 VQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
+ V+CG +H++ RDGRI +G +G+
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGR 333
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVA----LDGI 198
VKITQ + G +H A+ ++G Y WG GQ G L+ + R +V +
Sbjct: 91 VKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKL 150
Query: 199 FIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVL 258
++ VA GG H+ +T +G ++ WG + P D + + L
Sbjct: 151 TVRQVAAGGTHSVVLTREGHVWTWGQ---------------PWPPGDIKQISVPVRVQGL 195
Query: 259 PNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
N V+L+A G H L DGR+ WG N YGQ T +P PV
Sbjct: 196 EN-VRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPV 242
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDK--ELLPRRVVALDGIFI 200
+ + ++ G +H+ A+++KGEVY WG G G+LG L DK +++P++V L I
Sbjct: 248 LTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLG---LGDNDKSSKMVPQKVNLLAEEDI 304
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFS------FIPSDSESFLRNIP 254
V+CGG H+ A+T G ++++G G G+LG G + + IP SF
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIKIPPPEGSFNHTDE 364
Query: 255 ALVLPNGVQLVACGHSHTL 273
+ +ACG HTL
Sbjct: 365 EEEGKWSAKSIACGGRHTL 383
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 164 VYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWG 223
+ WG G GQLG + + +++ V AL+ ++ V G ++ A+ + G ++ WG
Sbjct: 7 IIAWGSGEDGQLG---IGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWG 63
Query: 224 SGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHG 283
Q G LG P+T + + IPS ++ L N+ + A G H L GR +
Sbjct: 64 WNQRGTLGHQPETKTEN-IPSRVKA-LANVK-------ITQAAIGGWHCLAVDDQGRAYA 114
Query: 284 WGYNSYGQAANQ 295
WG N YGQ +
Sbjct: 115 WGGNEYGQCGEE 126
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH-TSLQSGDKELLPRRVVALDGIF---- 199
I QVSCG H+ A++ G ++++G G+ G+LG+ + +G LP ++ +G F
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIKIPPPEGSFNHTD 363
Query: 200 --------IKDVACGGVHTCAVTE 215
K +ACGG HT A+ E
Sbjct: 364 EEEEGKWSAKSIACGGRHTLAIVE 387
>AT3G55580.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:20612766-20615730 FORWARD
Length = 488
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVA 204
+ +++CG H+A I++ G + T+G G GQ G S D EL P V +L GI I++VA
Sbjct: 313 VKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGST---DDELSPTCVSSLLGIRIEEVA 369
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN-GVQ 263
G HT + G +YA+G Q GQLG G +E+ + + A L N V+
Sbjct: 370 AGLWHTTCASSDGDVYAFGGNQFGQLGTGCD---------QAETLPKLLEAPNLENVNVK 420
Query: 264 LVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
++CG HT V +GR+ WG+N YGQ
Sbjct: 421 TISCGARHTAVITDEGRVFCWGWNKYGQ 448
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVA--LDGIFI 200
++I +V+ G +HT S G+VY +G GQLG Q+ E LP+ + A L+ + +
Sbjct: 363 IRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLGTGCDQA---ETLPKLLEAPNLENVNV 419
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
K ++CG HT +T++G ++ WG + GQLG+G + RN PA V
Sbjct: 420 KTISCGARHTAVITDEGRVFCWGWNKYGQLGIG-------------DVIDRNAPAEVRIK 466
Query: 261 GV--QLVACGHSHTLV 274
+ +ACG HTL+
Sbjct: 467 DCFPKNIACGWWHTLL 482
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 174 QLGHTSLQSGDKEL--LPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLG 231
Q S QS + +L LP V G+ I VA GG HT A+++ G ++ WG G GQLG
Sbjct: 208 QAAENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLG 267
Query: 232 LGPQ---TGSFSFIP-------SDSESFLRNIPAL-----VLPNGVQLVACGHSHTLVSL 276
LG + S IP + S N+ ++ VL + V+ +ACG H+ V
Sbjct: 268 LGSRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVIT 327
Query: 277 RDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
G + +G+ YGQ T P+ V
Sbjct: 328 DTGALLTFGWGLYGQCGQGSTDDELSPTCV 357
>AT5G48330.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:19585989-19587729 FORWARD
Length = 455
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSG-DKELLPRRVVALDGIFIKDV 203
I+ +S G YH+ A++ GE++ WG + GQLG + S D P+RV L+ + ++
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAA 143
Query: 204 ACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQ 263
GV + A+ + G+L+ WG + GQLGLG I + S + N+ A V
Sbjct: 144 FASGVVSAAIGDDGSLWVWGRSKRGQLGLGN-----GIIEARVPSRVENLAA----EHVV 194
Query: 264 LVACGHSHTLVSLRDGRIHGWGYNSYGQAAN 294
V+ G H L DG++ GWGY + G+ N
Sbjct: 195 KVSLGWGHALALTVDGKVFGWGYVADGRVGN 225
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 143 VKITQ----VSCGEYHTAAISEKGE--VYTWGLGNVGQLGHTSLQSGDKELLPRRVVALD 196
V IT+ ++ G H+ AI +GE + +WG QLG G E LPR V D
Sbjct: 330 VDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGR-----GKPENLPREVEGFD 384
Query: 197 GIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
G V+ G VH+ VTEKG + WG G+ G+LGLG +
Sbjct: 385 GESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSS 424
>AT5G16040.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:5240860-5243308 REVERSE
Length = 396
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 142 LVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIK 201
L + ++ G +H A+ E G ++ WG GQLG Q P V LD + +
Sbjct: 195 LENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQP---RSYPIPVQGLDDLTLV 251
Query: 202 DVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNG 261
D+A GG H+ A+T +G +Y WG G+ G+LG G S +P L+
Sbjct: 252 DIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVN--------LLAGED 303
Query: 262 VQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
+ V+CG +H++ RDGRI +G +G+
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGR 333
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 116/310 (37%), Gaps = 83/310 (26%)
Query: 1 ANEFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVW 60
+ E GQLG GT+E ++ VD LE V+SV G+ + AI +DG +L+ W
Sbjct: 12 SGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAIC----DDG-----KLFTW 62
Query: 61 GQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTC 120
G NQ + H +TK + S
Sbjct: 63 GWNQRGTLGHPP---------------ETKTESTPS------------------------ 83
Query: 121 EGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSL 180
L+ + A VKI Q + G +H A+ ++G Y WG GQ G
Sbjct: 84 -------LVKSLAN--------VKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPS 128
Query: 181 QSGDKELLPRRVVA----LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
+ + R +V + ++ VA GG H+ +T +G ++ WG
Sbjct: 129 KDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQ------------ 176
Query: 237 GSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQK 296
+ P D + + L N V+L+A G H L DG + WG N YGQ
Sbjct: 177 ---PWPPGDIKQISVPVRVQGLEN-VRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGD 232
Query: 297 TTYAWYPSPV 306
T YP PV
Sbjct: 233 TQPRSYPIPV 242
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 27/147 (18%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKD 202
+ + ++ G +H+ A++ +GEVY WG G G+LG K +LP++V L G I
Sbjct: 248 LTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSK-MLPQKVNLLAGEDIIQ 306
Query: 203 VACGGVHTCAVTEKGALYAWGSGQVGQLGLG----------------PQTGSFSFIPSDS 246
V+CGG H+ A+T G ++++G G G+LG G P G F+ +D
Sbjct: 307 VSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNH--TDE 364
Query: 247 ESFLRNIPALVLPNGVQLVACGHSHTL 273
E + I + VACG HTL
Sbjct: 365 EDDGKWI--------AKHVACGGRHTL 383
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 164 VYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWG 223
V WG G GQLG L + +++ L V AL+ ++ V G ++ A+ + G L+ WG
Sbjct: 7 VIAWGSGEDGQLG---LGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWG 63
Query: 224 SGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHG 283
Q G LG P+T + S + S ++++ + + VQ A G H L GR +
Sbjct: 64 WNQRGTLGHPPETKTES-----TPSLVKSLANVKI---VQ-AAIGGWHCLAVDDQGRAYA 114
Query: 284 WGYNSYGQAANQKT 297
WG N YGQ + +
Sbjct: 115 WGGNEYGQCGEEPS 128
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 95/228 (41%), Gaps = 59/228 (25%)
Query: 18 PKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQ------------- 64
P RV LE V+ ++ GA A+ E DGT LW WG N+
Sbjct: 189 PVRVQGLEN--VRLIAVGAFHNLALKE----DGT-----LWAWGNNEYGQLGTGDTQPRS 237
Query: 65 -PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEGL 123
PI + L T + + GG + S+ L + G + GW G G
Sbjct: 238 YPIPVQGLDDLTLVDIAA---GG------WHSTAL---TNEGEVYGW------GRGEHGR 279
Query: 124 QGARLINAFAKFLDEAPELV---KITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH-TS 179
G + +K L + L+ I QVSCG H+ A++ G ++++G G+ G+LG+
Sbjct: 280 LGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRK 339
Query: 180 LQSGDKELLPRRVVALDGIF------------IKDVACGGVHTCAVTE 215
+ +G LP + +G F K VACGG HT A+ E
Sbjct: 340 VTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAKHVACGGRHTLAIVE 387
>AT1G65920.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related |
chr1:24525267-24529204 REVERSE
Length = 1006
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 132/305 (43%), Gaps = 50/305 (16%)
Query: 5 GQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQ 64
G+LG +PKRV+ LE V+SV+C H T A+ E E L++WG +
Sbjct: 322 GKLGLKVNIDIDHPKRVESLEDVAVRSVACSDHQTCAVTESGE---------LYLWGIDG 372
Query: 65 PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTS----LGGVTC 120
+ F K S +LGG S + +CG + T+S G
Sbjct: 373 GTIEQSGSQFLTRKISD-VLGG--------SLTVLSVACGAWHTAIVTSSGQLFTYGSGT 423
Query: 121 EGLQGARLINAFAKFLD-EAPELVKITQVSCGEYHTAAISEK------------GEVYTW 167
G+ G + + K + E+ +K+ VSCG +HTAAI E G+++TW
Sbjct: 424 FGVLGHGSLESVTKPKEVESLRRMKVISVSCGPWHTAAIVETANDRKFYNAKSCGKLFTW 483
Query: 168 GLGNVGQLGHTSLQSGDKELLPRRVVAL-DGIFIKDVACGGVHTCAVTEKGALYAWGSGQ 226
G G+ G+LGH ++L+P V L D FIK V+CG T A++ G +Y GS
Sbjct: 484 GDGDKGRLGHA---DSKRKLVPTCVTELIDHDFIK-VSCGWTLTVALSISGTVYTMGSSI 539
Query: 227 VGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGY 286
GQLG P + + + + V+ +A G H V G ++ WG
Sbjct: 540 HGQLG----------CPRAKDKSVNVVLGNLTRQFVKDIASGSHHVAVLTSFGNVYTWGK 589
Query: 287 NSYGQ 291
GQ
Sbjct: 590 GMNGQ 594
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 130 NAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLP 189
+A + L E+ + + +S G H A ++ +GEV+ WG GN G+LG L+ P
Sbjct: 279 DALSPKLLESATMFDVQSISLGAKHAALVTRQGEVFCWGNGNSGKLG---LKVNIDIDHP 335
Query: 190 RRVVALDGIFIKDVACGGVHTCAVTEKGALYAWG--SGQVGQLGLGPQTGSFSFIPSDSE 247
+RV +L+ + ++ VAC TCAVTE G LY WG G + Q G T S + S
Sbjct: 336 KRVESLEDVAVRSVACSDHQTCAVTESGELYLWGIDGGTIEQSGSQFLTRKISDVLGGSL 395
Query: 248 SFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
+ L VACG HT + G++ +G ++G
Sbjct: 396 TVLS-------------VACGAWHTAIVTSSGQLFTYGSGTFG 425
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 147 QVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVV--ALDGIFIKDVA 204
+VSCG T A+S G VYT G GQLG ++ DK + VV L F+KD+A
Sbjct: 515 KVSCGWTLTVALSISGTVYTMGSSIHGQLG--CPRAKDKSV---NVVLGNLTRQFVKDIA 569
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL 264
G H +T G +Y WG G GQLGLG RN P LV P G +L
Sbjct: 570 SGSHHVAVLTSFGNVYTWGKGMNGQLGLGDVRD-------------RNSPVLVEPLGDRL 616
Query: 265 V---ACGHS-------HTLVSLRD 278
V ACG + H +SL D
Sbjct: 617 VESIACGLNLTAAICLHKEISLND 640
>AT3G03790.1 | Symbols: | ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein |
chr3:963195-967857 FORWARD
Length = 1078
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 21/171 (12%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHT--SLQSGDKELL-PRRVVA-LDGIFI 200
I VS ++H+ AIS GEVYTWG G G+LGH + SG ++ PR+V++ L +
Sbjct: 185 IKLVSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRV 244
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
K VA HT TE G +Y WGS + GQLG + D+++ R + + L
Sbjct: 245 KAVAAAKHHTVIATEGGDVYTWGSNREGQLG---------YTSVDTQATPRKVTS--LKA 293
Query: 261 GVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ----AANQKTTYAWYPSPVD 307
+ V+ + HT V G + WG N GQ +N + Y+ P VD
Sbjct: 294 KIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYS--PRLVD 342
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 112/281 (39%), Gaps = 69/281 (24%)
Query: 6 QLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQP 65
QLG G + +K P RVD L F+K VS + AI+ + ++ WG
Sbjct: 162 QLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAIS---------THGEVYTWG---- 208
Query: 66 ILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEGLQG 125
F GG + +P + G P + G+ G
Sbjct: 209 ----------------FGRGG---RLGHPEFDIHSGQAAVIT---PRQVISGL------G 240
Query: 126 ARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDK 185
+R + A V+ ++HT +E G+VYTWG GQLG+TS+ D
Sbjct: 241 SRRVKA----------------VAAAKHHTVIATEGGDVYTWGSNREGQLGYTSV---DT 281
Query: 186 ELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSD 245
+ PR+V +L + V+ HT V++ G ++ WG + GQLG G + ++ P
Sbjct: 282 QATPRKVTSLKAKIVA-VSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRL 340
Query: 246 SESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGY 286
+ + +A HTLV DG ++ WG+
Sbjct: 341 VDYLKGKV--------FTAIASSKYHTLVLRNDGEVYTWGH 373
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 160 EKGEVYTWGLGNVGQLGHTSLQSGDKEL--LPRRVVALDGIFIKDVACGGVHTCAVTEKG 217
+ EV++WG G QLG +G++ + +P RV +L G FIK V+ H+ A++ G
Sbjct: 148 QSSEVFSWGNGANYQLG-----TGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHG 202
Query: 218 ALYAWGSGQVGQLG---LGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLV 274
+Y WG G+ G+LG +G + I R + + + V+ VA HT++
Sbjct: 203 EVYTWGFGRGGRLGHPEFDIHSGQAAVITP------RQVISGLGSRRVKAVAAAKHHTVI 256
Query: 275 SLRDGRIHGWGYNSYGQ 291
+ G ++ WG N GQ
Sbjct: 257 ATEGGDVYTWGSNREGQ 273
>AT3G03790.2 | Symbols: | ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein |
chr3:963195-967857 FORWARD
Length = 1081
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 21/171 (12%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHT--SLQSGDKELL-PRRVVA-LDGIFI 200
I VS ++H+ AIS GEVYTWG G G+LGH + SG ++ PR+V++ L +
Sbjct: 188 IKLVSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRV 247
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
K VA HT TE G +Y WGS + GQLG + D+++ R + + L
Sbjct: 248 KAVAAAKHHTVIATEGGDVYTWGSNREGQLG---------YTSVDTQATPRKVTS--LKA 296
Query: 261 GVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ----AANQKTTYAWYPSPVD 307
+ V+ + HT V G + WG N GQ +N + Y+ P VD
Sbjct: 297 KIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYS--PRLVD 345
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 112/281 (39%), Gaps = 69/281 (24%)
Query: 6 QLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQP 65
QLG G + +K P RVD L F+K VS + AI+ + ++ WG
Sbjct: 165 QLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAIS---------THGEVYTWG---- 211
Query: 66 ILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEGLQG 125
F GG + +P + G P + G+ G
Sbjct: 212 ----------------FGRGG---RLGHPEFDIHSGQAAVIT---PRQVISGL------G 243
Query: 126 ARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDK 185
+R + A V+ ++HT +E G+VYTWG GQLG+TS+ D
Sbjct: 244 SRRVKA----------------VAAAKHHTVIATEGGDVYTWGSNREGQLGYTSV---DT 284
Query: 186 ELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSD 245
+ PR+V +L + V+ HT V++ G ++ WG + GQLG G + ++ P
Sbjct: 285 QATPRKVTSLKAKIVA-VSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRL 343
Query: 246 SESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGY 286
+ + +A HTLV DG ++ WG+
Sbjct: 344 VDYLKGKV--------FTAIASSKYHTLVLRNDGEVYTWGH 376
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 163 EVYTWGLGNVGQLGHTSLQSGDKEL--LPRRVVALDGIFIKDVACGGVHTCAVTEKGALY 220
EV++WG G QLG +G++ + +P RV +L G FIK V+ H+ A++ G +Y
Sbjct: 154 EVFSWGNGANYQLG-----TGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVY 208
Query: 221 AWGSGQVGQLG---LGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLR 277
WG G+ G+LG +G + I R + + + V+ VA HT+++
Sbjct: 209 TWGFGRGGRLGHPEFDIHSGQAAVITP------RQVISGLGSRRVKAVAAAKHHTVIATE 262
Query: 278 DGRIHGWGYNSYGQ 291
G ++ WG N GQ
Sbjct: 263 GGDVYTWGSNREGQ 276
>AT4G14368.1 | Symbols: | zinc ion binding | chr4:8274313-8278810
REVERSE
Length = 1079
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSR-LWVWGQ 62
FG LG G E YPK V L V+CG T AI E GT + SR L+ WG
Sbjct: 406 FGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGD 465
Query: 63 NQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCG--------------SCGGFIR 108
+ H G K + + + + DY + + CG + GG
Sbjct: 466 GDKNRLGH-----GNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSH 520
Query: 109 GW--PTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYT 166
G + S G + C L RL+ F + ++SCG++H A ++ + EV+T
Sbjct: 521 GQLGSSNSDGKLPC--LVQDRLVGEF------------VEEISCGDHHVAVLTSRSEVFT 566
Query: 167 WGLGNVGQLGHTSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGS 224
WG G+ G+LGH GDK+ P V AL +K ++CG T ++ ++ W S
Sbjct: 567 WGKGSNGRLGH-----GDKDDRKTPTLVEALRERHVKSISCGSNFTSSI----CIHKWVS 617
Query: 225 G 225
G
Sbjct: 618 G 618
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 134/313 (42%), Gaps = 48/313 (15%)
Query: 3 EFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQ 62
+FG G E G D F SVS C+ + P D S ++VWG+
Sbjct: 185 KFGSSDVGYERGNMLRPSTDG----FRISVSSTPSCSTGTSGP---DDIESLGDVYVWGE 237
Query: 63 --NQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCG-------SCGGFIRGWPTT 113
+ I + ++ T +K I L++ + CG + G + W
Sbjct: 238 VWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEE 297
Query: 114 SLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLG--N 171
+ GG G+Q +FL L I V+CGEYHT A+S G+++TWG G N
Sbjct: 298 A-GGRLGHGIQVDVCRPKLVEFL----ALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHN 352
Query: 172 VGQLGHTSLQSGDKELLPRRVVA-LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQL 230
VG LGH S S +P+RV ++G+ + VACG H+ T G L+ +G G G L
Sbjct: 353 VGLLGHGSDLS---HWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVL 409
Query: 231 GLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL--VACGHSHTLVSLRDGRIHGWGYNS 288
G G + +S S+ + + L +G++ VACG HT+ + N
Sbjct: 410 GHGDR---------ESVSYPKEVKML---SGLKTLKVACGVWHTVAIVE-------VMNQ 450
Query: 289 YGQAANQKTTYAW 301
G + + + + W
Sbjct: 451 TGTSTSSRKLFTW 463
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDG 197
E+ ++ + Q++CG H A ++ +GEV+TW G+LGH +Q P+ V L
Sbjct: 265 ESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGH-GIQV--DVCRPKLVEFLAL 321
Query: 198 IFIKDVACGGVHTCAVTEKGALYAWGSG--QVGQLGLGPQTGSFSFIPSDSESFLRNIPA 255
I VACG HTCAV+ G L+ WG G VG LG G + IP + +
Sbjct: 322 TNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHW--IP-------KRVSG 372
Query: 256 LVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
V V VACG H+ ++ +G++ +G ++G + YP V
Sbjct: 373 PVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEV 423
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 143 VKITQVSCGEYHTAAISE----------KGEVYTWGLGNVGQLGHTSLQSGDKE--LLPR 190
+K +V+CG +HT AI E +++TWG G+ +LGH G+KE LLP
Sbjct: 429 LKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGH-----GNKETYLLPT 483
Query: 191 RVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFL 250
V +L +ACG T A+T G ++ G GQLG G + D
Sbjct: 484 CVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDR---- 539
Query: 251 RNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
++ V+ ++CG H V + WG S G+
Sbjct: 540 ------LVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGR 574
>AT1G76950.1 | Symbols: PRAF1 | PRAF1; Ran GTPase binding /
chromatin binding / zinc ion binding |
chr1:28906952-28911325 FORWARD
Length = 1103
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 33/173 (19%)
Query: 141 ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELL--PRRVVALDGI 198
E + + VSCG +HTA I+ G ++T+G G G LGH GDKE + PR V +L G+
Sbjct: 387 EGLHVASVSCGPWHTALITSYGRLFTFGDGTFGVLGH-----GDKETVQYPREVESLSGL 441
Query: 199 FIKDVACGGVHTCAVTE------------KGALYAWGSGQVGQLGLGPQTGSFSFIPSDS 246
V+CG HT AV E G L+ WG G +LG G D
Sbjct: 442 RTIAVSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHG-----------DK 490
Query: 247 ESFLRN--IPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKT 297
+ L+ +PAL+ N +ACGHS T+ G++ G YGQ N +T
Sbjct: 491 DPRLKPTCVPALIDYN-FHKIACGHSLTVGLTTSGQVFTMGSTVYGQLGNLQT 542
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAE---PRENDGTISKSRLWVW 60
FG LG G +E +YP+ V+ L +VSCG TAA+ E + N ++S +L+ W
Sbjct: 418 FGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTW 477
Query: 61 GQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGS--CGGFIRGWPTTSLGGV 118
G + H G K + DY + CG G ++G
Sbjct: 478 GDGDKNRLGH-----GDKDPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFTMGST 532
Query: 119 TCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHT 178
L + +++ + ++SCG YH AA++ + EVYTWG G G+LGH
Sbjct: 533 VYGQLGNLQTDGKLPCLVEDKLASEFVEEISCGAYHVAALTSRNEVYTWGKGANGRLGHG 592
Query: 179 SLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
L+ D++ +P V AL +K +ACG +T A+ L+ W SG
Sbjct: 593 DLE--DRK-VPTIVEALKDRHVKYIACGSNYTAAI----CLHKWVSG 632
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDG 197
E+ ++ + Q++CG H A ++ +GE++TWG + G+LGH G PR V +L
Sbjct: 276 ESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHG---IGKDVFHPRLVESLTA 332
Query: 198 IFIKD-VACGGVHTCAVTEKGALYAWGSG--QVGQLGLGPQTGSFSFIPSDSESFLRNIP 254
D VACG HTCAVT G LY WG G VG LG G +IP L +
Sbjct: 333 TSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDIS--HWIPKRIAGSLEGL- 389
Query: 255 ALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
V V+CG HT + GR+ +G ++G + YP V+
Sbjct: 390 ------HVASVSCGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVE 436
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 108/305 (35%), Gaps = 94/305 (30%)
Query: 2 NEFGQLGDGTEEGRKYPKRVD-QLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVW 60
+ G LG G++ PKR+ LE V SVSCG TA I S RL+ +
Sbjct: 363 HNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHTALIT---------SYGRLFTF 413
Query: 61 GQNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTC 120
G ++ H G + YP V
Sbjct: 414 GDGTFGVLGH---------------GDKETVQYPREV----------------------- 435
Query: 121 EGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISE------------KGEVYTWG 168
E L G R I VSCG +HTAA+ E G+++TWG
Sbjct: 436 ESLSGLRTI-----------------AVSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTWG 478
Query: 169 LGNVGQLGHTSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQ 226
G+ +LGH GDK+ L P V AL +ACG T +T G ++ GS
Sbjct: 479 DGDKNRLGH-----GDKDPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFTMGSTV 533
Query: 227 VGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGY 286
GQLG G + D + V+ ++CG H ++ WG
Sbjct: 534 YGQLGNLQTDGKLPCLVEDK----------LASEFVEEISCGAYHVAALTSRNEVYTWGK 583
Query: 287 NSYGQ 291
+ G+
Sbjct: 584 GANGR 588
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 21/130 (16%)
Query: 147 QVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVV-ALDGIFIKDVAC 205
+++CG T ++ G+V+T G GQLG+ LQ+ K LP V L F+++++C
Sbjct: 509 KIACGHSLTVGLTTSGQVFTMGSTVYGQLGN--LQTDGK--LPCLVEDKLASEFVEEISC 564
Query: 206 GGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALV---LPNGV 262
G H A+T + +Y WG G G+LG G D E R +P +V V
Sbjct: 565 GAYHVAALTSRNEVYTWGKGANGRLGHG-----------DLED--RKVPTIVEALKDRHV 611
Query: 263 QLVACGHSHT 272
+ +ACG ++T
Sbjct: 612 KYIACGSNYT 621
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 162 GEVYTWG---LGNVGQLG----HTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVT 214
G+VY WG NV ++G + L + L+P+ + + + + +ACG H VT
Sbjct: 238 GDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVT 297
Query: 215 EKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLV 274
+G ++ WG G+LG G G F P R + +L + V VACG HT
Sbjct: 298 RQGEIFTWGEESGGRLGHG--IGKDVFHP-------RLVESLTATSSVDFVACGEFHTCA 348
Query: 275 SLRDGRIHGWG 285
G ++ WG
Sbjct: 349 VTLAGELYTWG 359
>AT5G60870.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:24485788-24487771 REVERSE
Length = 445
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 130 NAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLP 189
+ F L+ E I ++ G H+ A++ +G+V+TWG G G LGH +EL+P
Sbjct: 139 SVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYT---RELVP 195
Query: 190 RRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSE-- 247
RRV I +A G HT A+TE G LY WG + G +E
Sbjct: 196 RRVDDSWDCKISAIATSGTHTAAITESGELYMWGREE------GDGRLGLGPGRGPNEGG 249
Query: 248 --SFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSP 305
S + AL +P V V+CG T+ ++G++ WG NS + W P P
Sbjct: 250 GLSVPSKVKALTVP--VASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMP 307
Query: 306 V 306
V
Sbjct: 308 V 308
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 135/340 (39%), Gaps = 74/340 (21%)
Query: 5 GQLGDGTEEGRKYPK--------------------RVDQLEAEFVKSVSCGAHCTAAIAE 44
GQLG G EE R YP R+D + F +SCG
Sbjct: 59 GQLGGGIEEIRMYPSPVANLLFRSDQSFSLAQTPGRIDADSSSFRIGISCGLF------- 111
Query: 45 PRENDGTISKSRLWVWG-----------QNQPILINHLLIFTGIKFSTFILGGLQTKYDY 93
+ G LW+WG +N + N +F LGGL +
Sbjct: 112 ---HSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVALT 168
Query: 94 PSSVLWCGSCGGFIRGWPTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEY 153
++ GGF G + L+ + +D++ + KI+ ++
Sbjct: 169 HQGDVFTWGYGGF----------GALGHKVYTRELV---PRRVDDSWD-CKISAIATSGT 214
Query: 154 HTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKE----LLPRRVVALDGIFIKDVACGGVH 209
HTAAI+E GE+Y WG G E +P +V AL + + V+CGG
Sbjct: 215 HTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASVSCGGFF 273
Query: 210 TCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL--VAC 267
T A+T++G L+ WG+ +LG G G + +P +P+L GV++ +AC
Sbjct: 274 TMALTKEGQLWNWGANSNYELGRGDNLGGWEPMP---------VPSL---EGVRITQIAC 321
Query: 268 GHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
G H+L +G++ WG+ +GQ + P+ ++
Sbjct: 322 GGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIE 361
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 141 ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFI 200
E V+ITQ++CG YH+ A++E+G+V +WG G GQLG +SL++ + +P + AL I
Sbjct: 312 EGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRN---QKVPTEIEALADKKI 368
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
+A GG + A+T+ G L+ WG+ + QLG+
Sbjct: 369 VFIASGGSSSAAITDGGELWMWGNAKDFQLGV 400
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 163 EVYTWGLGNVGQLG-----------------HTSLQSGDKELLPRRVVALDGIFIKDVAC 205
++++WG G GQLG S QS P R+ A F ++C
Sbjct: 49 QLFSWGRGASGQLGGGIEEIRMYPSPVANLLFRSDQSFSLAQTPGRIDADSSSFRIGISC 108
Query: 206 GGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLV 265
G H+ +T G L+ WG G G+LG G ++ F+ N+ L + ++ +
Sbjct: 109 GLFHS-GLTIDGDLWIWGKGDGGRLGFG----------QENSVFVPNLNPLFEEHSIRCI 157
Query: 266 ACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
A G H++ G + WGY +G ++ T P VD
Sbjct: 158 ALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVD 199
>AT5G42140.1 | Symbols: | zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein |
chr5:16837547-16841640 REVERSE
Length = 1073
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 113 TSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNV 172
T G G G+R K L E+ ++ + ++CG H A +S +GEV+TWG +
Sbjct: 243 TKFGADKNIGYLGSRSDVLIPKPL-ESNVVLDVHHIACGVKHAALVSRQGEVFTWGEASG 301
Query: 173 GQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
G+LGH G P+ + +L I VACG HTCAVT G +Y WG G L
Sbjct: 302 GRLGHGM---GKDVTGPQLIESLAATSIDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLL 358
Query: 233 GPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQA 292
G T +IP L + + V+CG HT + G++ +G ++G
Sbjct: 359 GHGTDVSHWIPKRISGPLEGLQ-------IASVSCGPWHTALITSTGQLFTFGDGTFGVL 411
Query: 293 ANQKTTYAWYPSPVD 307
+ +YP V+
Sbjct: 412 GHGDKETVFYPREVE 426
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 116/306 (37%), Gaps = 95/306 (31%)
Query: 5 GQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQ-- 62
G+LG G + P+ ++ L A + V+CG T A+ E ++ WG
Sbjct: 302 GRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCAVTMTGE---------IYTWGDGT 352
Query: 63 NQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEG 122
+ L+ H G + W + G EG
Sbjct: 353 HNAGLLGH---------------------------------GTDVSHWIPKRISG-PLEG 378
Query: 123 LQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQS 182
LQ I VSCG +HTA I+ G+++T+G G G LGH
Sbjct: 379 LQ--------------------IASVSCGPWHTALITSTGQLFTFGDGTFGVLGH----- 413
Query: 183 GDKELL--PRRVVALDGIFIKDVACGGVHTCAVTE-----------KGALYAWGSGQVGQ 229
GDKE + PR V +L G+ VACG H A+ E G L+ WG G +
Sbjct: 414 GDKETVFYPREVESLSGLRTIAVACGVWHAAAIVEVIVTHSSSSVSSGKLFTWGDGDKSR 473
Query: 230 LGLGPQTGSFSFIPSDSESFLR-NIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNS 288
LG G D E L+ + ++ + VACGHS T+ G+++ G
Sbjct: 474 LGHG-----------DKEPRLKPTCVSALIDHTFHRVACGHSLTVGLTTSGKVYTMGSTV 522
Query: 289 YGQAAN 294
YGQ N
Sbjct: 523 YGQLGN 528
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 16/226 (7%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEP--RENDGTISKSRLWVWG 61
FG LG G +E YP+ V+ L +V+CG AAI E + ++S +L+ WG
Sbjct: 408 FGVLGHGDKETVFYPREVESLSGLRTIAVACGVWHAAAIVEVIVTHSSSSVSSGKLFTWG 467
Query: 62 QNQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGS--CGGFIRGWPTTSLGGVT 119
+ H G K + D+ + CG G ++G
Sbjct: 468 DGDKSRLGH-----GDKEPRLKPTCVSALIDHTFHRVACGHSLTVGLTTSGKVYTMGSTV 522
Query: 120 CEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTS 179
L +++ + +++CG YH A ++ + EV+TWG G G+LGH
Sbjct: 523 YGQLGNPNADGKLPCLVEDKLTKDCVEEIACGAYHVAVLTSRNEVFTWGKGANGRLGHGD 582
Query: 180 LQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
++ D++ P V AL +K++ACG T A+ L+ W SG
Sbjct: 583 VE--DRK-APTLVDALKERHVKNIACGSNFTAAI----CLHKWVSG 621
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 147 QVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACG 206
+V+CG T ++ G+VYT G GQLG+ + D +L L ++++ACG
Sbjct: 498 RVACGHSLTVGLTTSGKVYTMGSTVYGQLGNPN---ADGKLPCLVEDKLTKDCVEEIACG 554
Query: 207 GVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALV---LPNGVQ 263
H +T + ++ WG G G+LG G D E R P LV V+
Sbjct: 555 AYHVAVLTSRNEVFTWGKGANGRLGHG-----------DVED--RKAPTLVDALKERHVK 601
Query: 264 LVACGHSHT 272
+ACG + T
Sbjct: 602 NIACGSNFT 610
>AT3G53830.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related |
chr3:19940814-19943592 FORWARD
Length = 487
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVA 204
I +SCG H+AAI++ G + T+G G GQ GH + + +L P V + + ++ VA
Sbjct: 312 IKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNT---NDQLRPMAVSEVKSVRMESVA 368
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL 264
G HT ++ G +YA+G Q GQLG G T +P + +N+ +
Sbjct: 369 AGLWHTICISSDGKVYAFGGNQFGQLGTG--TDHAEILPRLLDG--QNLEG----KHAKA 420
Query: 265 VACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
V+CG H+ V DG++ WG+N YGQ T P+ V
Sbjct: 421 VSCGARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQV 462
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVA--LDGIFI 200
V++ V+ G +HT IS G+VY +G GQLG + + E+LPR + L+G
Sbjct: 362 VRMESVAAGLWHTICISSDGKVYAFGGNQFGQLGTGTDHA---EILPRLLDGQNLEGKHA 418
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
K V+CG H+ + E G L WG + GQLGLG ++ RNIP V +
Sbjct: 419 KAVSCGARHSAVLAEDGQLLCWGWNKYGQLGLG-------------DTNDRNIPTQVQLD 465
Query: 261 GVQL--VACGHSHTLV 274
G +L VACG HTL+
Sbjct: 466 GCRLRKVACGWWHTLL 481
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 51/190 (26%)
Query: 143 VKITQVSCGEYHTAA---------------ISEKGEVYTWGLGNVGQLGHTS-------- 179
V+IT V+ G HT A +S+ G+++ WG G GQLG S
Sbjct: 214 VRITSVATGGRHTLALSVEDSFEDDHVFTEVSDLGQIWGWGYGGEGQLGLGSRIKMVSSP 273
Query: 180 ------------------LQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYA 221
L G + G +IK ++CGG H+ A+T+ G L
Sbjct: 274 HLIPCLESIGSGKERSFILHQGGTTTTSAQASREPGQYIKAISCGGRHSAAITDAGGLIT 333
Query: 222 WGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRI 281
+G G GQ G G + +R ++ VA G HT+ DG++
Sbjct: 334 FGWGLYGQCGHGNTNDQLRPMAVSEVKSVR----------MESVAAGLWHTICISSDGKV 383
Query: 282 HGWGYNSYGQ 291
+ +G N +GQ
Sbjct: 384 YAFGGNQFGQ 393
>AT3G02510.2 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:522524-524536 REVERSE
Length = 310
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVA----LDGI 198
VKITQ + G +H A+ ++G Y WG GQ G L+ + R +V +
Sbjct: 91 VKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKL 150
Query: 199 FIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVL 258
++ VA GG H+ +T +G ++ WG + P D + + L
Sbjct: 151 TVRQVAAGGTHSVVLTREGHVWTWGQ---------------PWPPGDIKQISVPVRVQGL 195
Query: 259 PNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
N V+L+A G H L DGR+ WG N YGQ T +P PV
Sbjct: 196 EN-VRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPV 242
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 59/309 (19%)
Query: 1 ANEFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVW 60
+ E GQLG GT E +++ V+ LE V+SV G+ + AI + DGT ++ W
Sbjct: 12 SGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICD----DGT-----MFTW 62
Query: 61 GQNQPILINH------------LLIFTGIKFSTFILGGLQ--TKYDYPSSVLWCGSCGGF 106
G NQ + H + +K + +GG D + W G+ G
Sbjct: 63 GWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122
Query: 107 IRGWPTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYT 166
P G + R K AP+L + QV+ G H+ ++ +G V+T
Sbjct: 123 CGEEPLKDEMG------RPVRRDIVIPKRC--APKLT-VRQVAAGGTHSVVLTREGHVWT 173
Query: 167 WGL----GNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAW 222
WG G++ Q+ +P RV L+ + + +A G H A+ E G L AW
Sbjct: 174 WGQPWPPGDIKQIS-----------VPVRVQGLENVRL--IAVGAFHNLALEEDGRLLAW 220
Query: 223 GSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIH 282
G+ + GQLG G + +P ++ + L L + +A G H+ G ++
Sbjct: 221 GNNEYGQLGTGDTQPTSHPVP------VQGLDDLTLVD----IAAGGWHSTALTDKGEVY 270
Query: 283 GWGYNSYGQ 291
GWG +G+
Sbjct: 271 GWGRGEHGR 279
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 142 LVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIK 201
L + ++ G +H A+ E G + WG GQLG Q P V LD + +
Sbjct: 195 LENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSH---PVPVQGLDDLTLV 251
Query: 202 DVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPS 244
D+A GG H+ A+T+KG +Y WG G+ G+LGLG S +P
Sbjct: 252 DIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQ 294
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 164 VYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWG 223
+ WG G GQLG + + +++ V AL+ ++ V G ++ A+ + G ++ WG
Sbjct: 7 IIAWGSGEDGQLG---IGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWG 63
Query: 224 SGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHG 283
Q G LG P+T + + IPS ++ L N+ + A G H L GR +
Sbjct: 64 WNQRGTLGHQPETKTEN-IPSRVKA-LANVK-------ITQAAIGGWHCLAVDDQGRAYA 114
Query: 284 WGYNSYGQAANQ 295
WG N YGQ +
Sbjct: 115 WGGNEYGQCGEE 126
>AT5G60870.2 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:24485788-24487564 REVERSE
Length = 383
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 128/319 (40%), Gaps = 57/319 (17%)
Query: 16 KYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWG-----------QNQ 64
+ P R+D + F +SCG + G LW+WG +N
Sbjct: 21 QTPGRIDADSSSFRIGISCGLF----------HSGLTIDGDLWIWGKGDGGRLGFGQENS 70
Query: 65 PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEGLQ 124
+ N +F LGGL + ++ GGF G +
Sbjct: 71 VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGF----------GALGHKVY 120
Query: 125 GARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGL----GNVGQLGHTSL 180
L+ + +D++ + KI+ ++ HTAAI+E GE+Y WG G +G
Sbjct: 121 TRELV---PRRVDDSWD-CKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGP 176
Query: 181 QSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFS 240
G +P +V AL + + V+CGG T A+T++G L+ WG+ +LG G G +
Sbjct: 177 NEGGGLSVPSKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWE 235
Query: 241 FIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYA 300
+P S +R + +ACG H+L +G++ WG+ +GQ +
Sbjct: 236 PMPVPSLEGVR----------ITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQ 285
Query: 301 WYPSPVD**CDTIERFADR 319
P+ IE AD+
Sbjct: 286 KVPT-------EIEALADK 297
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 30/243 (12%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQN 63
FG LG P+RVD + +++ TAAI E E L++WG+
Sbjct: 112 FGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGE---------LYMWGRE 162
Query: 64 QPILINHLLIFTGIKFSTFILGGLQ--TKYDYPSSVLWCGSCGGFIRGWPTT-----SLG 116
+ L G GGL +K + + SCGGF T + G
Sbjct: 163 EGDGRLGLGPGRGPNEG----GGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWG 218
Query: 117 GVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLG 176
+ L + + + E V+ITQ++CG YH+ A++E+G+V +WG G GQLG
Sbjct: 219 ANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG 278
Query: 177 HTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAV-------TEKGALYAWGSGQVGQ 229
+SL++ + +P + AL I +A GG + A+ T+ G L+ WG+ + Q
Sbjct: 279 SSSLRN---QKVPTEIEALADKKIVFIASGGSSSAAITGWDWFLTDGGELWMWGNAKDFQ 335
Query: 230 LGL 232
LG+
Sbjct: 336 LGV 338
>AT1G27060.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr1:9395023-9396673 FORWARD
Length = 386
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 142 LVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIK 201
L I+ ++CG H A++ G+V+TWG G+ GQLGH + + LP+ V D I
Sbjct: 47 LPSISMLACGGAHVIALTSGGKVFTWGRGSSGQLGHGDILN---ITLPKLVSFFDDSVIT 103
Query: 202 DVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNG 261
A G H+ V++ G ++ G+G GQLG G + S S N +
Sbjct: 104 QAAAGWSHSGFVSDSGCIFTCGNGSFGQLGHGD---TLSLSTPAKVSHFNN-------DS 153
Query: 262 VQLVACGHSHTLVSLRDGRIHGWGYNSYGQ 291
V++VACG H+LV ++ G+G GQ
Sbjct: 154 VKMVACGMRHSLVLFAGNQVCGFGSGKRGQ 183
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 20/231 (8%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWV-WGQ 62
FGQLG G P +V + VK V+CG + + + G S R + +
Sbjct: 129 FGQLGHGDTLSLSTPAKVSHFNNDSVKMVACGMRHSLVLFAGNQVCGFGSGKRGQLGFSS 188
Query: 63 NQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTSLGGVTCEG 122
++ +N + +G+K + + D+ +++ S G W GG
Sbjct: 189 DRIKSVNLPCVVSGLKDVEVVR--ISANGDHSAAI----SADGQFFSWGRGFCGGPDVHA 242
Query: 123 LQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQS 182
Q P + +V+ G H ++ GEV+ G Q LQ
Sbjct: 243 PQ-------------SLPSPLSFREVAVGWNHALLLTVDGEVFKLGSTLNKQPEKQQLQI 289
Query: 183 GDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLG 233
E L +V DG+ + +A G H+ AVTE G + WG G+ GQLGLG
Sbjct: 290 DSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLG 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 140 PELVK------ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELL--PRR 191
P+LV ITQ + G H+ +S+ G ++T G G+ GQLGH GD L P +
Sbjct: 91 PKLVSFFDDSVITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLGH-----GDTLSLSTPAK 145
Query: 192 VVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
V + +K VACG H+ + + +GSG+ GQLG
Sbjct: 146 VSHFNNDSVKMVACGMRHSLVLFAGNQVCGFGSGKRGQLGF 186
>AT3G23270.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:8316436-8320337 FORWARD
Length = 1045
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 43/239 (17%)
Query: 4 FGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGT-ISKSRLWVWGQ 62
FG LG G E YPK V L V+C TAAI E T +S +L+ WG
Sbjct: 387 FGVLGHGNRESVSYPKEVQSLNGLKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGD 446
Query: 63 NQPILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCG--------------SCGGFIR 108
+ H G K + + + + DY + CG + GG
Sbjct: 447 GDKNRLGH-----GNKETYLLPTCVSSLIDYNFHKIACGHTFTVALTTSGHVFTMGGTAH 501
Query: 109 GWPTTSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWG 168
G S+ L RL+ F + +++CG +H A ++ + EV+TWG
Sbjct: 502 GQLGNSISDGKLPCLVQDRLVGEF------------VEEIACGAHHVAVLTSRSEVFTWG 549
Query: 169 LGNVGQLGHTSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
G G+LGH GD E P V AL +K ++CG T ++ ++ W SG
Sbjct: 550 KGANGRLGH-----GDTEDKRTPTLVEALRDRHVKSLSCGSNFTSSI----CIHKWVSG 599
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 138 EAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDG 197
E+ ++ + Q+ CG H A ++ +GEV+TWG G+LGH + P+ V L
Sbjct: 246 ESNVVLDVHQIVCGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDISR---PKLVEFLAL 302
Query: 198 IFIKDVACGGVHTCAVTEKGALYAWGSG--QVGQLGLGPQTGSFSFIPSDSESFLRNIPA 255
I VACG HTC V+ G L++WG G VG LG G +IP L +
Sbjct: 303 TNIDFVACGEYHTCVVSTSGDLFSWGDGIHNVGLLGHGSDIS--HWIPKRVSGPLEGLQV 360
Query: 256 LVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
L VACG H+ ++ +G++ +G ++G + YP V
Sbjct: 361 LS-------VACGTWHSALATANGKLFTFGDGAFGVLGHGNRESVSYPKEV 404
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 27/177 (15%)
Query: 143 VKITQVSCGEYHTAAISE----------KGEVYTWGLGNVGQLGHTSLQSGDKE--LLPR 190
+K +V+C +HTAAI E +++TWG G+ +LGH G+KE LLP
Sbjct: 410 LKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGH-----GNKETYLLPT 464
Query: 191 RVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFL 250
V +L +ACG T A+T G ++ G GQLG G + D
Sbjct: 465 CVSSLIDYNFHKIACGHTFTVALTTSGHVFTMGGTAHGQLGNSISDGKLPCLVQDR---- 520
Query: 251 RNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD 307
++ V+ +ACG H V + WG + G+ + T P+ V+
Sbjct: 521 ------LVGEFVEEIACGAHHVAVLTSRSEVFTWGKGANGRLGHGDTEDKRTPTLVE 571
>AT5G60870.3 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr5:24485788-24487257 REVERSE
Length = 276
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 141 ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFI 200
E V+ITQ++CG YH+ A++E+G+V +WG G GQLG +SL++ + +P + AL I
Sbjct: 143 EGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRN---QKVPTEIEALADKKI 199
Query: 201 KDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPN 260
+A GG + A+T+ G L+ WG+ + QLG+ P P + +FL P+
Sbjct: 200 VFIASGGSSSAAITDGGELWMWGNAKDFQLGV-PGLPEIQTTPVEV-NFLTEEDE-CQPH 256
Query: 261 GVQLVACGHSHTL 273
V ++ G SH L
Sbjct: 257 KVISISIGASHAL 269
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 144 KITQVSCGEYHTAAISEKGEVYTWGL----GNVGQLGHTSLQSGDKELLPRRVVALDGIF 199
KI+ ++ HTAAI+E GE+Y WG G +G G +P +V AL +
Sbjct: 36 KISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALT-VP 94
Query: 200 IKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLP 259
+ V+CGG T A+T++G L+ WG+ +LG G G + +P S +R
Sbjct: 95 VASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVR-------- 146
Query: 260 NGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPVD**CDTIERFADR 319
+ +ACG H+L +G++ WG+ +GQ + P+ IE AD+
Sbjct: 147 --ITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPT-------EIEALADK 197
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKD 202
V + VSCG + T A++++G+++ WG + +LG G + P V +L+G+ I
Sbjct: 93 VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWE---PMPVPSLEGVRITQ 149
Query: 203 VACGGVHTCAVTEKGALYAWGSGQVGQLG 231
+ACGG H+ A+TE+G + +WG G GQLG
Sbjct: 150 IACGGYHSLALTEEGKVLSWGHGGHGQLG 178
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 168 GLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQV 227
G G G LGH +EL+PRRV I +A G HT A+TE G LY WG +
Sbjct: 8 GYGGFGALGHKVYT---RELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREE- 63
Query: 228 GQLGLGPQTGSFSFIPSDSE----SFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHG 283
G +E S + AL +P V V+CG T+ ++G++
Sbjct: 64 -----GDGRLGLGPGRGPNEGGGLSVPSKVKALTVP--VASVSCGGFFTMALTKEGQLWN 116
Query: 284 WGYNSYGQAANQKTTYAWYPSPV 306
WG NS + W P PV
Sbjct: 117 WGANSNYELGRGDNLGGWEPMPV 139
>AT3G47660.1 | Symbols: | Ran GTPase binding / chromatin binding /
zinc ion binding | chr3:17571192-17574805 FORWARD
Length = 954
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 35/204 (17%)
Query: 115 LGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLG--NV 172
LG C + +LI+ F E + CGE+HT A++ G++Y WG G N
Sbjct: 331 LGHGVCSYVPHPKLIDEFNGSTVELAD--------CGEFHTCAVTASGDLYAWGDGDHNA 382
Query: 173 GQLGHTSLQSGDKELLPRRVVA-LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLG 231
G LG L SG P R++ ++GI++K ++CG HT VT +G L+ +G G G LG
Sbjct: 383 GLLG---LGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFVTSEGKLFTFGDGTFGALG 439
Query: 232 LGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLV--ACG--HSHTLVSL-----RDGRIH 282
G + S + R + AL NG + + ACG HS +VS+ G++
Sbjct: 440 HGDRI---------STNIPREVEAL---NGCRTIKAACGVWHSAAVVSVFGEATSSGKLF 487
Query: 283 GWGYNSYGQAANQKTTYAWYPSPV 306
WG G+ + PS V
Sbjct: 488 TWGDGDDGRLGHGDIECRLIPSCV 511
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 47/210 (22%)
Query: 141 ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFI 200
E + + +SCG +HTA ++ +G+++T+G G G LGH S + +PR V AL+G
Sbjct: 404 EGIYVKAISCGPWHTAFVTSEGKLFTFGDGTFGALGHGDRISTN---IPREVEALNGCRT 460
Query: 201 KDVACGGVHTCAV-------TEKGALYAWGSGQVGQLGLGP-------------QTGSFS 240
ACG H+ AV T G L+ WG G G+LG G T SF
Sbjct: 461 IKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTSFQ 520
Query: 241 FIP--------------------SDSESFLRNIPALVL----PNGVQLVACGHSHTLVSL 276
+ +D + P+ + + VQ VACG H V
Sbjct: 521 QVACGQSITVALSMSGQVYAMGTADPSHDIVRAPSCIEGGLGKSFVQEVACGFHHIAVLN 580
Query: 277 RDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
++ WG S GQ + T Y P+ V
Sbjct: 581 SKAEVYTWGKGSNGQLGHGDTEYRCMPTLV 610
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 116 GGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQL 175
GG+ G + + ++F + ++ + +SCG + ++++G++Y+WG + G+L
Sbjct: 272 GGMHKSGSSSSLMTDSFLPKVLKSHVALDAQSISCGTNYAVLVTKQGQMYSWGEESGGRL 331
Query: 176 GHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG--QVGQLGLG 233
GH P+ + +G ++ CG HTCAVT G LYAWG G G LGLG
Sbjct: 332 GHGVCSYVPH---PKLIDEFNGSTVELADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLG 388
Query: 234 PQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
+G+ + P + I V+ ++CG HT +G++ +G ++G
Sbjct: 389 --SGASHWKPVRILGQMEGI-------YVKAISCGPWHTAFVTSEGKLFTFGDGTFG 436
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKEL--LPRRVVALDGIFIKD 202
+ +V+CG +H A ++ K EVYTWG G+ GQLGH GD E +P V AL G ++
Sbjct: 566 VQEVACGFHHIAVLNSKAEVYTWGKGSNGQLGH-----GDTEYRCMPTLVKALKGKQVRK 620
Query: 203 VACGGVHTCAV 213
V CG +T +
Sbjct: 621 VVCGSNYTATI 631
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 114/283 (40%), Gaps = 52/283 (18%)
Query: 5 GQLGDGTEEGRKYPKRV-DQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQN 63
G LG G+ P R+ Q+E +VK++SCG TA + S+ +L+ +G
Sbjct: 383 GLLGLGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFVT---------SEGKLFTFGDG 433
Query: 64 QPILINH-LLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTS-------- 114
+ H I T I L G +T + +W + + G T+S
Sbjct: 434 TFGALGHGDRISTNIPREVEALNGCRTIK--AACGVWHSAAVVSVFGEATSSGKLFTWGD 491
Query: 115 -LGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVG 173
G G RLI + LD QV+CG+ T A+S G+VY G
Sbjct: 492 GDDGRLGHGDIECRLIPSCVTELD----TTSFQQVACGQSITVALSMSGQVYAMG----- 542
Query: 174 QLGHTSLQSGDKELLPRRVVA-LDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
T+ S D P + L F+++VACG H + K +Y WG G GQLG
Sbjct: 543 ----TADPSHDIVRAPSCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTWGKGSNGQLGH 598
Query: 233 GPQTGSFSFIPSDSESFLRNIPALVLP---NGVQLVACGHSHT 272
G D+E R +P LV V+ V CG ++T
Sbjct: 599 G-----------DTE--YRCMPTLVKALKGKQVRKVVCGSNYT 628
>AT3G15430.2 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:5209408-5211562 FORWARD
Length = 488
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 127 RLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDK- 185
R+I AF + + + I +VS G+ H A+ G VYTWG G G LGH GD+
Sbjct: 313 RVIQAFKR------KGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGH-----GDEN 361
Query: 186 -ELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPS 244
++ P+ +V L+ V T + E G LY +G G LG P G
Sbjct: 362 DKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGF-PDRGV------ 414
Query: 245 DSESFLR-NIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYP 303
S+ LR + + P+ V V+ G HT+V + GRI G+G N Q + P
Sbjct: 415 -SDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEP 473
Query: 304 SPV 306
+ +
Sbjct: 474 TEI 476
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 120 CEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTS 179
C L +R I F L EA + QV+ G + T +S +G YT G GQLGH
Sbjct: 195 CGHLDTSRPI--FRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGH-- 250
Query: 180 LQSGD--KELLPRRVVALDGI-FIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
GD +P+ V L I + +A G + AVT+ G++Y++GSG LG G Q
Sbjct: 251 ---GDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQ 307
Query: 237 GSFSFIPSDSESFLRNIPALVLPNGVQL--VACGHSHTLVSLRDGRIHGWG 285
P ++F R G+ + V+ G H + +GR++ WG
Sbjct: 308 DELQ--PRVIQAFKR--------KGIHILRVSAGDEHAVALDSNGRVYTWG 348
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 113 TSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNV 172
SL GV G + + + AF E P ++ QVS + H+A + + G+V T G +
Sbjct: 136 VSLSGVLAHGSETTQCV-AFTPI--EFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSS 192
Query: 173 GQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
GH L + P+ V AL G K VA G T ++ +G Y GS GQLG
Sbjct: 193 HCCGH--LDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGH 250
Query: 233 GPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNS 288
G +P E FL+ I +V +A G S+ L +DG ++ +G S
Sbjct: 251 GDTLD--RPVPKVVE-FLKTIGPVV------QIAAGPSYVLAVTQDGSVYSFGSGS 297
>AT3G15430.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:5209408-5211562 FORWARD
Length = 488
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 127 RLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDK- 185
R+I AF + + + I +VS G+ H A+ G VYTWG G G LGH GD+
Sbjct: 313 RVIQAFKR------KGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGH-----GDEN 361
Query: 186 -ELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPS 244
++ P+ +V L+ V T + E G LY +G G LG P G
Sbjct: 362 DKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGF-PDRGV------ 414
Query: 245 DSESFLR-NIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYP 303
S+ LR + + P+ V V+ G HT+V + GRI G+G N Q + P
Sbjct: 415 -SDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEP 473
Query: 304 SPV 306
+ +
Sbjct: 474 TEI 476
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 120 CEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTS 179
C L +R I F L EA + QV+ G + T +S +G YT G GQLGH
Sbjct: 195 CGHLDTSRPI--FRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGH-- 250
Query: 180 LQSGD--KELLPRRVVALDGI-FIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQT 236
GD +P+ V L I + +A G + AVT+ G++Y++GSG LG G Q
Sbjct: 251 ---GDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQ 307
Query: 237 GSFSFIPSDSESFLRNIPALVLPNGVQL--VACGHSHTLVSLRDGRIHGWG 285
P ++F R G+ + V+ G H + +GR++ WG
Sbjct: 308 DELQ--PRVIQAFKR--------KGIHILRVSAGDEHAVALDSNGRVYTWG 348
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 113 TSLGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNV 172
SL GV G + + + AF E P ++ QVS + H+A + + G+V T G +
Sbjct: 136 VSLSGVLAHGSETTQCV-AFTPI--EFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSS 192
Query: 173 GQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
GH L + P+ V AL G K VA G T ++ +G Y GS GQLG
Sbjct: 193 HCCGH--LDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGH 250
Query: 233 GPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNS 288
G +P E FL+ I +V +A G S+ L +DG ++ +G S
Sbjct: 251 GDTLD--RPVPKVVE-FLKTIGPVV------QIAAGPSYVLAVTQDGSVYSFGSGS 297
>AT5G08710.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related |
chr5:2834858-2837866 REVERSE
Length = 434
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 144 KITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDV 203
IT V+CG HT ++E V+ GL + GQLG + ++S + P V LD + +
Sbjct: 83 SITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKS--HAMDPLEVSGLDKDILH-I 139
Query: 204 ACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQ 263
+ G H+ A+T G LY WG GQLGLG + +P+ E+ L I +Q
Sbjct: 140 SAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEA-LHGIT-------IQ 191
Query: 264 LVACGHSHTLVSLRDG 279
VA G H+ V++ DG
Sbjct: 192 SVALGSEHS-VAVTDG 206
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 127 RLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKE 186
R + F L + E +K+T V+ G H+A E G + +G ++ ++G +++
Sbjct: 233 RSNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTP 292
Query: 187 LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDS 246
+ V + ++VACGG HTC VT G LY WGS + G LG S S +
Sbjct: 293 SIISEVP-----YAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPV---- 343
Query: 247 ESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGY 286
+ L + V V+CG HT ++ D + WG+
Sbjct: 344 -----RVEGPFLESTVSQVSCGWKHT-AAISDNNVFTWGW 377
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVA 204
I +S G YH+AAI+ GE+Y WG + GQLG ++ +P +V AL GI I+ VA
Sbjct: 136 ILHISAGYYHSAAITVDGELYMWGKNSSGQLG-LGKKAARVVRVPTKVEALHGITIQSVA 194
Query: 205 CGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQL 264
G H+ AVT+ G + +WG G G+LG G Q+ F + S+SE R I L G+++
Sbjct: 195 LGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKEL---EGIKV 251
Query: 265 --VACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
VA G H+ + +G +G S + A PS +
Sbjct: 252 TNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSII 295
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 134/319 (42%), Gaps = 40/319 (12%)
Query: 1 ANEFGQLGDGTEEGRKYPKRVDQLEAEFVKSVSCGAHCTAAIAEPRENDGTISKSRLWVW 60
+ ++G+LG G + + P L + +V+CG T + E R R++
Sbjct: 56 SGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLTETR---------RVFAT 106
Query: 61 GQNQ------PILINHLLIFTGIKFSTFILGGLQTKYDYPSSVLWCGSCGGFIRGWPTTS 114
G N + +H + + + + Y + +++ + G + W S
Sbjct: 107 GLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAAI----TVDGELYMWGKNS 162
Query: 115 LGGVTCEGLQGARLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQ 174
G + G + AR++ K EA + I V+ G H+ A+++ GEV +WG G G+
Sbjct: 163 SGQLGL-GKKAARVVRVPTKV--EALHGITIQSVALGSEHSVAVTDGGEVLSWGGGGSGR 219
Query: 175 LGHTSLQS------GDKELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVG 228
LGH S + E PR + L+GI + +VA G +H+ E G+ + +G +
Sbjct: 220 LGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSIN 279
Query: 229 QLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWGYNS 288
++G G + + S + +P + VACG HT V R G ++ WG N
Sbjct: 280 KMGFG------GVRNATTPSIISEVPY------AEEVACGGYHTCVVTRGGELYTWGSNE 327
Query: 289 YGQAANQKTTYAWYPSPVD 307
G T + P V+
Sbjct: 328 NGCLGTDSTYVSHSPVRVE 346
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 159 SEKGEVYT--WGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAVTEK 216
SE G+ + WG G+ G+LG +L D + P AL I VACGG HT +TE
Sbjct: 44 SESGKRFAAMWGSGDYGRLGLGNL---DSQWTPAVCSALSDHSITAVACGGAHTLFLTET 100
Query: 217 GALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLVACGHSHTLVSL 276
++A G GQLG+ S + P + ++I ++ G+ H+
Sbjct: 101 RRVFATGLNDCGQLGV-SDVKSHAMDPLEVSGLDKDILH---------ISAGYYHSAAIT 150
Query: 277 RDGRIHGWGYNSYGQ 291
DG ++ WG NS GQ
Sbjct: 151 VDGELYMWGKNSSGQ 165
>AT3G26100.2 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:9538063-9540149 FORWARD
Length = 532
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 146 TQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVAC 205
+Q G H+ A++ KGEVYT+G N GQLGH + + + P R +L G+ I A
Sbjct: 146 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTED-EARIQPVR--SLQGVRIIQAAA 202
Query: 206 GGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLV 265
G T +++ G +YA G G+ G Q G+ + L+NI V
Sbjct: 203 GAARTMLISDDGKVYACGKESFGEAEYGGQ-GTKPVTTPQLVTSLKNI-------FVVQA 254
Query: 266 ACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
A G+ T V R+G+++ + + + G+ +Q P P+
Sbjct: 255 AIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPL 295
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 23/162 (14%)
Query: 140 PELVK------ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVV 193
P+LV + Q + G Y TA +S +G+VYT+ GN G+LGH Q+ ++ PR ++
Sbjct: 240 PQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGH---QTEAADVEPRPLL 296
Query: 194 A-LDGIFIKDVACGGVHTCAVT---EKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESF 249
L+ + + +A G + A+ ++Y+ G G G+LG G +T E +
Sbjct: 297 GPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRT---------DEKY 347
Query: 250 LRNIPALVLPN-GVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
R I + N ++VA G H V +DGR+ WG+ YG
Sbjct: 348 PRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYG 389
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH--TSLQSGDKE---LLPRRVVALDG 197
VK V+ G+Y T +S+ G+VY++G G LGH + + G++ L P V +L
Sbjct: 411 VKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQ 470
Query: 198 IFIKDVACG-------GVHTCAVTEKGALYAWGSGQVGQLG 231
+ + V HT A+TE G L+A+G+G GQLG
Sbjct: 471 VNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQLG 511
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 127 RLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKE 186
R+I F + L+ P +V + G +H A + + G V TWG G G LGH + + E
Sbjct: 349 RVIEQF-QILNLQPRVV-----AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEEC---E 399
Query: 187 LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGP 234
+P+ V L + VA G T V++ G +Y++G G+ LG P
Sbjct: 400 SVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHP 447
>AT3G26100.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr3:9538458-9540149 FORWARD
Length = 432
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 146 TQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKDVAC 205
+Q G H+ A++ KGEVYT+G N GQLGH + + + P R +L G+ I A
Sbjct: 46 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTED-EARIQPVR--SLQGVRIIQAAA 102
Query: 206 GGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGVQLV 265
G T +++ G +YA G G+ G Q G+ + L+NI V
Sbjct: 103 GAARTMLISDDGKVYACGKESFGEAEYGGQ-GTKPVTTPQLVTSLKNIF-------VVQA 154
Query: 266 ACGHSHTLVSLRDGRIHGWGYNSYGQAANQKTTYAWYPSPV 306
A G+ T V R+G+++ + + + G+ +Q P P+
Sbjct: 155 AIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPL 195
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 23/162 (14%)
Query: 140 PELVK------ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVV 193
P+LV + Q + G Y TA +S +G+VYT+ GN G+LGH Q+ ++ PR ++
Sbjct: 140 PQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGH---QTEAADVEPRPLL 196
Query: 194 A-LDGIFIKDVACGGVHTCAVT---EKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESF 249
L+ + + +A G + A+ ++Y+ G G G+LG G +T E +
Sbjct: 197 GPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRT---------DEKY 247
Query: 250 LRNIPALVLPN-GVQLVACGHSHTLVSLRDGRIHGWGYNSYG 290
R I + N ++VA G H V +DGR+ WG+ YG
Sbjct: 248 PRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYG 289
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGH--TSLQSGDKE---LLPRRVVALDG 197
VK V+ G+Y T +S+ G+VY++G G LGH + + G++ L P V +L
Sbjct: 311 VKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQ 370
Query: 198 IFIKDVACG-------GVHTCAVTEKGALYAWGSGQVGQLG 231
+ + V HT A+TE G L+A+G+G GQLG
Sbjct: 371 VNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQLG 411
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 127 RLINAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKE 186
R+I F + L+ P +V + G +H A + + G V TWG G G LGH + + E
Sbjct: 249 RVIEQF-QILNLQPRVV-----AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEEC---E 299
Query: 187 LLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGP 234
+P+ V L + VA G T V++ G +Y++G G+ LG P
Sbjct: 300 SVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHP 347
>AT1G19880.1 | Symbols: | regulator of chromosome condensation
(RCC1) family protein | chr1:6900648-6903818 REVERSE
Length = 538
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 10/151 (6%)
Query: 143 VKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKD 202
++ C +H A+ +G YTWG GQLGH + D+ P V L I
Sbjct: 58 IRFVATGCASFHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDR---PTVVSGLSKHKIVK 114
Query: 203 VACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLPNGV 262
A G HT V++ G +G + GQLGLG F + +S V+ + V
Sbjct: 115 AAAGRNHTVVVSDDGQSLGFGWNKYGQLGLGSAKNGFVSVEVESTPL-----PCVVSDEV 169
Query: 263 QLVACGHSHT--LVSLRDGRIHGWGYNSYGQ 291
VACG T L S I G YGQ
Sbjct: 170 TNVACGADFTVWLSSTEGASILTAGLPQYGQ 200
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 144 KITQVSCGEYHTAAIS--EKGEVYTWGLGNVGQLGH---TSLQSGDKELL--------PR 190
++T V+CG T +S E + T GL GQLGH D + P+
Sbjct: 168 EVTNVACGADFTVWLSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPK 227
Query: 191 RVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFL 250
+ +L G I VACG HT AV + G +Y WG G G+LG Q ++ P + F
Sbjct: 228 AIASLAGETIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWA--PRRIDVFQ 285
Query: 251 RNIPALVLPNGVQLVACGHSHTLVSLRDGRIHGWG 285
RN ++ PN + ++ G +++ + G+++ WG
Sbjct: 286 RN--NVLPPNAI--LSAGSANSACTAGGGQLYMWG 316
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 145 ITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLPRRVVALDGIFIKD-- 202
I +V+CG HT A+ + G VYTWG G G+LGH + E PRR+ +F ++
Sbjct: 237 IVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKD---EWAPRRI----DVFQRNNV 289
Query: 203 ------VACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSDSESFLRNIPAL 256
++ G ++ G LY WG I ++ + ++ P +
Sbjct: 290 LPPNAILSAGSANSACTAGGGQLYMWGK-----------------IKNNGDDWMYPKPMM 332
Query: 257 VLPN-GVQLVACGHSHTLVSLRDGRIHGWGYNSYGQAA----NQKTTYAWYPSPVD 307
L ++ + G H V D WG+ YG+ QK++ A P VD
Sbjct: 333 DLSGWNLRWMDSGSMHHFVGA-DSSCISWGHAQYGELGYGPNGQKSSAA--PKKVD 385
>AT5G11580.1 | Symbols: | UVB-resistance protein-related /
regulator of chromosome condensation (RCC1) family
protein | chr5:3718913-3721125 FORWARD
Length = 553
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 130 NAFAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTW----GLGNVGQLGHTSLQSGDK 185
++ + + + PE + V CG +HT+ +S +G V++W GLG + T +++GD
Sbjct: 310 SSLPEPVSDLPEHAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGD- 368
Query: 186 ELLPRRVVALDGIFIK--DVACGGVHTCAVTEKG-ALYAWGSGQVGQLGLG 233
+ +PR++ F V+CG HT V + G L++WG G+ G LG G
Sbjct: 369 DSVPRKISGGSSRFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTG 419
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 137 DEAPELV-------KITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSLQSGDKELLP 189
D++P L+ KI ++ GE HT A++ G VY+WG G G+LG T +S EL+P
Sbjct: 3 DKSPTLLISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLG-TGKES--DELVP 59
Query: 190 RRV-----VALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGL 232
V D I I VA G H+ AV++ G+++ WG GQLG
Sbjct: 60 VLVEFPNQAEGDRIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGF 107
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 186 ELLPRRVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSGQVGQLGLGPQTGSFSFIPSD 245
E L R++++L A G HT A+T G +Y+WG G G+LG G + S +P
Sbjct: 12 EDLSRKIISL--------AAGEAHTIALTGDGCVYSWGRGMFGRLGTGKE--SDELVP-- 59
Query: 246 SESFLRNIPALVLPNGVQL--VACGHSHTLVSLRDGRIHGWGYNSYGQ 291
L P + +++ VA G H+L DG + WGYN YGQ
Sbjct: 60 ---VLVEFPNQAEGDRIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQ 104
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 81/200 (40%), Gaps = 41/200 (20%)
Query: 122 GLQGARLINAFAKFLDEAP-ELVKITQVSCGEYHTAAISEKGEVYTWGLGNVGQLGHTSL 180
G + L+ +F ++A + ++I V+ G YH+ A+S+ G V+ WG GQLG
Sbjct: 51 GKESDELVPVLVEFPNQAEGDRIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGFDGE 110
Query: 181 QSGD----KELLPR-----------RVVALDGIFIKDVACGGVHTCAVTEKGALYAWGSG 225
S K L R R V D + + V G + + A+ G L+ WG+
Sbjct: 111 NSLAPCLIKNLFERETSSSSLNDSGREVGSD-LKVCTVKAGSMMSLAIDNVGGLWMWGNV 169
Query: 226 QVGQLGLGPQTGSFSFIPSDSESFLRNIPALVLP---NGVQLVACGHSHTLVSLRDGRIH 282
P+ SF+ IP IP +L V VACG H + + G IH
Sbjct: 170 PPQDSEPDPRL-SFTSIP---------IPFPILDFHGRTVLKVACGDEHVVALVGPGDIH 219
Query: 283 -----------GWGYNSYGQ 291
WG N +GQ
Sbjct: 220 KDNSYDVSVLYSWGNNHHGQ 239
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 145 ITQVSCGEYHTAAISEKGEV-----------YTWGLGNVGQLGHTSLQSGDKELLPRRVV 193
+ +V+CG+ H A+ G++ Y+WG + GQLG L G+ P+ V
Sbjct: 199 VLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLG---LGDGESRARPQTVE 255
Query: 194 ALD---GIFIKDVACGGVHTCAVT-----EKGALYAW--GSGQVGQLGLGPQTGSFSFIP 243
+ G+ + D+ACG HT +T KG W G G+ GQLG ++ S +P
Sbjct: 256 TFNQKSGLTVYDIACGAHHTALLTYRKETPKGPSICWTFGFGENGQLGH--RSNKSSSLP 313
Query: 244 SDSESFLRNIPALVLPNGVQLVA--CGHSHTLVSLRDGRIHGWG 285
P LP LV+ CG HT V +G + WG
Sbjct: 314 E---------PVSDLPEHAYLVSVDCGLFHTSVVSSEGYVWSWG 348