Jatropha Genome Database

JcCA0289411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289411.10 - phase: 0 
         (547 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04920.1 | Symbols: SFR6 | SFR6 (SENSITIVE TO FREEZING 6) | c...   741   0.0  

>AT4G04920.1 | Symbols: SFR6 | SFR6 (SENSITIVE TO FREEZING 6) |
            chr4:2497931-2504996 FORWARD
          Length = 1278

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/561 (70%), Positives = 430/561 (76%), Gaps = 27/561 (4%)

Query: 4    SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL 63
            +LDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV EPW+  GET+
Sbjct: 728  NLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETI 787

Query: 64   SSIDPEAMAVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRX 123
            + I+PEAMAV+P LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNR 
Sbjct: 788  TGINPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRN 847

Query: 124  XXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXAWVQGAIAKIS 166
                                                             AW+QGAIAKIS
Sbjct: 848  NVTSPTQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKIS 907

Query: 167  STSDGVSNSTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRR 226
            S++DG SNST +PISG  +FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFC+  R 
Sbjct: 908  SSNDG-SNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRS 966

Query: 227  TQQLPRFIGGAQRNPDSNMQKPQPGAPGKVEEGNSVSSKLAPTMVRSDEGQAARGAQLVP 286
            +    RF    QRN D + QK Q GA  K+EE NS  +K  P + R ++ Q  RGAQL  
Sbjct: 967  S----RF---PQRNADVSSQKLQTGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGT 1017

Query: 287  GVKGAEDGPAGRSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTSALAHPLPVSQVGSGNI 346
            GVKG ++  A  +++GSGNAGQGYT+EEVRVLF ILMDLC+RTS LAHPLP SQVGSGNI
Sbjct: 1018 GVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNI 1077

Query: 347  QVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMF 406
            QVRLHYIDGNYTVLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRN+F
Sbjct: 1078 QVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLF 1137

Query: 407  GGPWSDLEDTSSADDTPRQSSYTDSLDFSSLENCDVYCGVNGLWPKKRRMSERDAAFGLN 466
            GGP S+ ED    DD  + S+  D  D +    CD Y  V+ LWP+KRRMSERDAAFG N
Sbjct: 1138 GGPGSEPEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSN 1197

Query: 467  TSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATSPPNQNEREA 526
            TSVGLGAYLGIMGSRRDVVTA WKTGLEGVWYKCIRCLRQTSAFASPGAT  PN NERE 
Sbjct: 1198 TSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERET 1257

Query: 527  WWISRWAYGCPMCGGTWVRVV 547
            WW SRW Y CPMCGGTWVRVV
Sbjct: 1258 WWTSRWVYCCPMCGGTWVRVV 1278