Jatropha Genome Database

JcCA0288061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.20 + phase: 0 
         (209 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43680.1 | Symbols:  | unknown protein | chr5:17544074-175453...   157   4e-39

>AT5G43680.1 | Symbols:  | unknown protein | chr5:17544074-17545354
           FORWARD
          Length = 232

 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 124/206 (60%), Gaps = 25/206 (12%)

Query: 1   MFGMSYGEIFLLLGATAALIGPKDLPVIARTAGRLAGRAIGYVQLARGQFESVMQQSQAR 60
           M G+SYGE+ L++GATAAL+GPKDLP+IAR  GRL GRAIGY+ +ARG  + VM+Q Q +
Sbjct: 1   MLGLSYGELLLIVGATAALVGPKDLPIIARAGGRLFGRAIGYINMARGHLDGVMKQPQMQ 60

Query: 61  QVHKELQDTMAQLEAIRHEIRSISILSPGPLTRRLVDN--VDNTSGSNANGICENQDVEN 118
           ++ KE+QD  AQ++AI H  R  S+    PLTRR VDN      S S  NGI  + +VE 
Sbjct: 61  EISKEVQDLRAQVDAISHGAR-FSLFDSSPLTRR-VDNQKTQEPSPSTTNGIVTSVNVEE 118

Query: 119 TLKVTISQPSSEQRIGGSIATSAFSKASDSCSMHSQATVYARLAEAAAQKTSLLDSGADA 178
             K  +   +  Q   GS        +S S ++H+QAT +ARL+E    KT  L+S +  
Sbjct: 119 KQK-PVDHYTKAQEFSGS--------SSASVNLHAQATSFARLSETVNGKTHSLNSDSP- 168

Query: 179 EKLIDDAGLPNVLPVSAESAGMLPKR 204
                      VLPVSAE A +LP+R
Sbjct: 169 -----------VLPVSAEMAKLLPQR 183