Jatropha Genome Database

JcCA0288061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.10 - phase: 0 
         (221 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54640.1 | Symbols: TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE AL...   275   1e-74
AT4G02610.1 | Symbols:  | tryptophan synthase, alpha subunit, pu...   255   1e-68

>AT3G54640.1 | Symbols: TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA
           CHAIN); tryptophan synthase | chr3:20223331-20225303
           REVERSE
          Length = 312

 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 164/199 (82%), Gaps = 3/199 (1%)

Query: 1   MAIAVKPTASFLHLRKPETHLFIRFPPYKSAVVSTRRIAEMAAL-TVTPSLGLAETFSNL 59
           MAIA K    FL    P++ +  R      + +S +R   MA+L T +P+LGLA+TF+ L
Sbjct: 1   MAIAFKSGVFFLQ--SPKSQIGFRHSSPPDSSLSFKRFTPMASLSTSSPTLGLADTFTQL 58

Query: 60  KKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRS 119
           KK+GKVAFIPYITAGDPDLSTTAEALKVLD+CGSDIIELGVPYSDPLADGPVIQAAATRS
Sbjct: 59  KKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPVIQAAATRS 118

Query: 120 LAKGTNFDAVISMLKEVIPQLSSPVALFTYYNPILKRGIEKFMSTVKDVGVHGLVVPDVP 179
           L +GTN D+++ ML +V+PQ+S P++LFTYYNPILKRG+ KFMS+++ VGV GLVVPDVP
Sbjct: 119 LERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVP 178

Query: 180 LEETELLRKEAVKNNIELV 198
           LEETE+LRKEA+ N+IELV
Sbjct: 179 LEETEMLRKEALNNDIELV 197


>AT4G02610.1 | Symbols:  | tryptophan synthase, alpha subunit,
           putative | chr4:1147662-1149217 FORWARD
          Length = 275

 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 139/156 (89%), Gaps = 2/156 (1%)

Query: 47  TPS--LGLAETFSNLKKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSD 104
           TPS  +GL+ETF+ LK +GKVA IPYITAGDPDLSTTA+ALKVLDSCGSDIIELGVPYSD
Sbjct: 6   TPSSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSD 65

Query: 105 PLADGPVIQAAATRSLAKGTNFDAVISMLKEVIPQLSSPVALFTYYNPILKRGIEKFMST 164
           PLADGP IQAAA RSL KGTNF+++ISMLKEVIPQLS P+ALFTYYNPIL+RG+E +M+ 
Sbjct: 66  PLADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTV 125

Query: 165 VKDVGVHGLVVPDVPLEETELLRKEAVKNNIELVCL 200
           +K+ GVHGL+VPDVPLEETE LR EA K+ IELV L
Sbjct: 126 IKNAGVHGLLVPDVPLEETETLRNEARKHQIELVLL 161