Jatropha Genome Database

JcCA0287971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287971.10 + phase: 0 
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29160.3 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342 ...   224   4e-59
AT4G29160.1 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342 ...   224   4e-59
AT2G19830.1 | Symbols: SNF7.2, VPS32 | SNF7.2 | chr2:8558101-855...   214   2e-56
AT4G29160.2 | Symbols: SNF7.1 | SNF7.1 | chr4:14381350-14382342 ...   200   6e-52
AT5G09260.1 | Symbols: VPS20.2 | VPS20.2 (VACUOLAR PROTEIN SORTI...    47   6e-06

>AT4G29160.3 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342
           FORWARD
          Length = 219

 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

Query: 1   MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
           M NRLFGKPKQE NAL TLD                             ++RA+NKRAAI
Sbjct: 1   MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
           QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GA+AMKAMQKATNID
Sbjct: 61  QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALATPIGXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXX 179
           DVDKTMDEINEQTENMKQIQEALATP+G                                
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATT 180

Query: 180 XXXXXXXXXXXGRQPARPVPQKRT 203
                      GRQPARPVPQKRT
Sbjct: 181 APPLPSVPVPAGRQPARPVPQKRT 204


>AT4G29160.1 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342
           FORWARD
          Length = 219

 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

Query: 1   MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
           M NRLFGKPKQE NAL TLD                             ++RA+NKRAAI
Sbjct: 1   MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
           QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GA+AMKAMQKATNID
Sbjct: 61  QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALATPIGXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXX 179
           DVDKTMDEINEQTENMKQIQEALATP+G                                
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATT 180

Query: 180 XXXXXXXXXXXGRQPARPVPQKRT 203
                      GRQPARPVPQKRT
Sbjct: 181 APPLPSVPVPAGRQPARPVPQKRT 204


>AT2G19830.1 | Symbols: SNF7.2, VPS32 | SNF7.2 |
           chr2:8558101-8559389 REVERSE
          Length = 213

 Score =  214 bits (546), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 115/149 (77%), Gaps = 1/149 (0%)

Query: 1   MF-NRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAA 59
           MF NRLFGKPKQET+ L TLD                             F+RA+NKRAA
Sbjct: 1   MFMNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAA 60

Query: 60  IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNI 119
           IQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA+AMKAMQKATNI
Sbjct: 61  IQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNI 120

Query: 120 DDVDKTMDEINEQTENMKQIQEALATPIG 148
           DDVDKTMDEINEQTENMKQIQEAL+ P G
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG 149


>AT4G29160.2 | Symbols: SNF7.1 | SNF7.1 | chr4:14381350-14382342
           FORWARD
          Length = 192

 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 111/155 (71%), Gaps = 1/155 (0%)

Query: 50  FTRARNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAA 109
           ++RA+NKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GA+A
Sbjct: 23  YSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASA 82

Query: 110 MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGXXXX-XXXXXXXXXXXXXXXX 168
           MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATP+G                     
Sbjct: 83  MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEE 142

Query: 169 XXXXXXXXXXXXXXXXXXXXXXGRQPARPVPQKRT 203
                                 GRQPARPVPQKRT
Sbjct: 143 LESQLLQPATTAPPLPSVPVPAGRQPARPVPQKRT 177


>AT5G09260.1 | Symbols: VPS20.2 | VPS20.2 (VACUOLAR PROTEIN
           SORTING-ASSOCIATED PROTEIN 20.2) | chr5:2876797-2878355
           FORWARD
          Length = 216

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 50  FTRARNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAA 109
             R + K  A+  LK+KR  E+ ++Q+  + + +  Q+  +E         ++L+ G  A
Sbjct: 49  LIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNA 108

Query: 110 MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIG 148
           +KA+Q   N+DDV K MD+    T   K  Q+ L+  +G
Sbjct: 109 IKAIQSEVNLDDVQKLMDD----TAEAKAYQDELSAILG 143