Jatropha Genome Database

JcCA0287821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287821.10 + phase: 2 /TE
         (261 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    64   9e-11

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 114 DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
           D+R+ST GY   L   +IS KS K  V++ S+ EAE+ A   AT   +WL  F   L + 
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL- 513

Query: 174 DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKE 214
             +++  ++FCDN+AA+  + N  + +  KH++    SV+E
Sbjct: 514 -PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553