Jatropha Genome Database

JcCA0287661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287661.10 - phase: 0 /pseudo
         (74 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    50   4e-07

>AT3G06240.1 | Symbols:  | F-box family protein |
          chr3:1887336-1888619 FORWARD
          Length = 427

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query: 4  LHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          L  ++ITEILL LP K +   RCVSK FC L   P F K HL+
Sbjct: 36 LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLD 78