Jatropha Genome Database
- JcCA0286951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0286951.10 + phase: 0
(196 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 310 4e-85
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 301 1e-82
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 301 1e-82
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 301 2e-82
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 241 3e-64
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 237 3e-63
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 237 3e-63
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 237 4e-63
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 228 2e-60
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 161 2e-40
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 161 2e-40
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 161 2e-40
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 157 3e-39
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 157 3e-39
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 157 3e-39
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 157 5e-39
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 153 6e-38
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 141 2e-34
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 141 3e-34
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 140 6e-34
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 135 2e-32
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 135 2e-32
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 134 3e-32
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 134 4e-32
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 130 5e-31
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 125 2e-29
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 125 2e-29
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 122 1e-28
AT1G34170.2 | Symbols: ARF13 | transcription factor | chr1:12444... 122 2e-28
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 122 2e-28
AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);... 122 2e-28
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 120 6e-28
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 118 2e-27
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 117 5e-27
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 110 5e-25
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 81 5e-16
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 310 bits (794), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/184 (79%), Positives = 159/184 (86%), Gaps = 3/184 (1%)
Query: 1 MKAPPNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
MKAP NGF+ +S EGE+K INS+LWHACA YFPQGHSEQVAASMQK+
Sbjct: 1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60
Query: 61 TDFIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQSR 117
TDFIP+YPNLPSKLIC+LH+VTLHAD ETDEVYAQMTLQP YD+EALLASDMGLK +R
Sbjct: 61 TDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNR 120
Query: 118 QPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRH 177
QP EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQE+VA+DLHD TWTFRH
Sbjct: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRH 180
Query: 178 IYRG 181
IYRG
Sbjct: 181 IYRG 184
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/185 (79%), Positives = 156/185 (84%), Gaps = 4/185 (2%)
Query: 1 MKAPP-NGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQK 59
MKAP NG N EGER++INSELWHACA YFPQGHSEQVAASMQK
Sbjct: 1 MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60
Query: 60 ETDFIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQS 116
+TDFIPSYPNLPSKLICMLHNVTL+AD ETDEVYAQMTLQP YD++ALLASDMGLK +
Sbjct: 61 QTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLN 120
Query: 117 RQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFR 176
RQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP LDFSMQPP QELVA+D+HDNTWTFR
Sbjct: 121 RQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFR 180
Query: 177 HIYRG 181
HIYRG
Sbjct: 181 HIYRG 185
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/185 (79%), Positives = 156/185 (84%), Gaps = 4/185 (2%)
Query: 1 MKAPP-NGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQK 59
MKAP NG N EGER++INSELWHACA YFPQGHSEQVAASMQK
Sbjct: 1 MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60
Query: 60 ETDFIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQS 116
+TDFIPSYPNLPSKLICMLHNVTL+AD ETDEVYAQMTLQP YD++ALLASDMGLK +
Sbjct: 61 QTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLN 120
Query: 117 RQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFR 176
RQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP LDFSMQPP QELVA+D+HDNTWTFR
Sbjct: 121 RQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFR 180
Query: 177 HIYRG 181
HIYRG
Sbjct: 181 HIYRG 185
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/185 (79%), Positives = 156/185 (84%), Gaps = 4/185 (2%)
Query: 1 MKAPP-NGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQK 59
MKAP NG N EGER++INSELWHACA YFPQGHSEQVAASMQK
Sbjct: 1 MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60
Query: 60 ETDFIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQS 116
+TDFIPSYPNLPSKLICMLHNVTL+AD ETDEVYAQMTLQP YD++ALLASDMGLK +
Sbjct: 61 QTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLN 120
Query: 117 RQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFR 176
RQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP LDFSMQPP QELVA+D+HDNTWTFR
Sbjct: 121 RQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFR 180
Query: 177 HIYRG 181
HIYRG
Sbjct: 181 HIYRG 185
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/186 (63%), Positives = 138/186 (74%), Gaps = 6/186 (3%)
Query: 1 MKAPPNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
M+ GF EGE++ +NSELWHACA YFPQGHSEQVAAS KE
Sbjct: 1 MRLSSAGFNPQPHEGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKE 60
Query: 61 TD-FIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPYD----KEALLASDMGLKQ 115
D IP+YP+L +LIC LHNVT+HAD ETDEVYAQMTLQP + K+ L +++G+
Sbjct: 61 VDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVP- 119
Query: 116 SRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTF 175
SRQP +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+S QPPAQEL+ARDLHDN W F
Sbjct: 120 SRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKF 179
Query: 176 RHIYRG 181
RHI+RG
Sbjct: 180 RHIFRG 185
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 137/186 (73%), Gaps = 7/186 (3%)
Query: 1 MKAPPNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
MK +G EGE K +NSELWHACA YFPQGHSEQVAA+ KE
Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59
Query: 61 TD-FIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPY----DKEALLASDMGLKQ 115
D IP+YP+LP +LIC LHNVT+HAD ETDEVYAQMTLQP KE + ++G+
Sbjct: 60 VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIP- 118
Query: 116 SRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTF 175
S+QP+ +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+++QPPAQEL+ARDLHD W F
Sbjct: 119 SKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKF 178
Query: 176 RHIYRG 181
RHI+RG
Sbjct: 179 RHIFRG 184
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 137/186 (73%), Gaps = 7/186 (3%)
Query: 1 MKAPPNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
MK +G EGE K +NSELWHACA YFPQGHSEQVAA+ KE
Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59
Query: 61 TD-FIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPY----DKEALLASDMGLKQ 115
D IP+YP+LP +LIC LHNVT+HAD ETDEVYAQMTLQP KE + ++G+
Sbjct: 60 VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIP- 118
Query: 116 SRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTF 175
S+QP+ +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+++QPPAQEL+ARDLHD W F
Sbjct: 119 SKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKF 178
Query: 176 RHIYRG 181
RHI+RG
Sbjct: 179 RHIFRG 184
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 115/172 (66%), Positives = 133/172 (77%), Gaps = 6/172 (3%)
Query: 15 GERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETD-FIPSYPNLPSK 73
GE++ +NSELWHACA YFPQGHSEQVAAS KE D IP+YP+L +
Sbjct: 17 GEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQ 76
Query: 74 LICMLHNVTLHADAETDEVYAQMTLQPYD----KEALLASDMGLKQSRQPAEFFCKTLTA 129
LIC LHNVT+HAD ETDEVYAQMTLQP + K+ L +++G+ SRQP +FCKTLTA
Sbjct: 77 LICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVP-SRQPTNYFCKTLTA 135
Query: 130 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SDTSTHGGFSVPRRAAEK+FPPLD+S QPPAQEL+ARDLHDN W FRHI+RG
Sbjct: 136 SDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRG 187
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 130/172 (75%), Gaps = 5/172 (2%)
Query: 15 GERK-SINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE-TDFIPSYPNLPS 72
G RK INSELWHACA YF QGHSEQVA S ++ T +P+YPNLPS
Sbjct: 45 GTRKPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPS 104
Query: 73 KLICMLHNVTLHADAETDEVYAQMTLQPY--DKEALLASDMG-LKQSRQPAEFFCKTLTA 129
+L+C +HNVTLHAD ++DE+YAQM+LQP +++ D G L+ S+ P EFFCKTLTA
Sbjct: 105 QLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTA 164
Query: 130 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SDTSTHGGFSVPRRAAEK+FPPLD+S QPP QELV RDLH+NTWTFRHIYRG
Sbjct: 165 SDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRG 216
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDFIPSYPNLPSKLICMLHNV 81
ELWHACA YFPQGH EQV AS Q +P Y +LPSKL+C + NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 82 TLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGF 138
L A+A+TDEVYAQ+TL P D+ A+ R FCKTLTASDTSTHGGF
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGF 179
Query: 139 SVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SV RR A++ PPLD S QPP QELVA+DLH N W FRHI+RG
Sbjct: 180 SVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRG 222
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDFIPSYPNLPSKLICMLHNV 81
ELWHACA YFPQGH EQV AS Q +P Y +LPSKL+C + NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 82 TLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGF 138
L A+A+TDEVYAQ+TL P D+ A+ R FCKTLTASDTSTHGGF
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGF 179
Query: 139 SVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SV RR A++ PPLD S QPP QELVA+DLH N W FRHI+RG
Sbjct: 180 SVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRG 222
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDFIPSYPNLPSKLICMLHNV 81
ELWHACA YFPQGH EQV AS Q +P Y +LPSKL+C + NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 82 TLHADAETDEVYAQMTLQP---YDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGF 138
L A+A+TDEVYAQ+TL P D+ A+ R FCKTLTASDTSTHGGF
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGF 179
Query: 139 SVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SV RR A++ PPLD S QPP QELVA+DLH N W FRHI+RG
Sbjct: 180 SVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRG 222
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 5 PNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDF 63
P G +S++ + ELWHACA YFP+GH EQ+ ASM Q
Sbjct: 11 PGGVLSDA-------LCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63
Query: 64 IPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP-YDKEALLASDMGLKQSRQ-PAE 121
+PS+ NLPSK++C + N+ A+ ETDEVYAQ+TL P D+ + D +++ +
Sbjct: 64 MPSF-NLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVH 122
Query: 122 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FCKTLTASDTSTHGGFSV RR A+ PPLD S QPP QELVA DLH++ W FRHI+RG
Sbjct: 123 SFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRG 182
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 5 PNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDF 63
P G +S++ + ELWHACA YFP+GH EQ+ ASM Q
Sbjct: 11 PGGVLSDA-------LCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63
Query: 64 IPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP-YDKEALLASDMGLKQSRQ-PAE 121
+PS+ NLPSK++C + N+ A+ ETDEVYAQ+TL P D+ + D +++ +
Sbjct: 64 MPSF-NLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVH 122
Query: 122 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FCKTLTASDTSTHGGFSV RR A+ PPLD S QPP QELVA DLH++ W FRHI+RG
Sbjct: 123 SFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRG 182
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 5 PNGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKETDF 63
P G +S++ + ELWHACA YFP+GH EQ+ ASM Q
Sbjct: 11 PGGVLSDA-------LCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63
Query: 64 IPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQP-YDKEALLASDMGLKQSRQ-PAE 121
+PS+ NLPSK++C + N+ A+ ETDEVYAQ+TL P D+ + D +++ +
Sbjct: 64 MPSF-NLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVH 122
Query: 122 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FCKTLTASDTSTHGGFSV RR A+ PPLD S QPP QELVA DLH++ W FRHI+RG
Sbjct: 123 SFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRG 182
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 101/172 (58%), Gaps = 21/172 (12%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVT 82
ELWHACA YFPQGH EQ DF + LP + C + +V
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVK 106
Query: 83 LHADAETDEVYAQMTLQPYD-------KEALLASDMG------LKQSRQPAEFFCKTLTA 129
LHA+ TDEVYAQ++L P +E ++ D G LK+S P FCKTLTA
Sbjct: 107 LHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTP-HMFCKTLTA 165
Query: 130 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SDTSTHGGFSVPRRAAE FPPLD+S P+QEL+ARDLH W FRHIYRG
Sbjct: 166 SDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRG 217
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 104/175 (59%), Gaps = 14/175 (8%)
Query: 20 INSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLH 79
I SELWHACA YFPQGH EQ A IP + +L +++C +
Sbjct: 62 IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKF-DLNPQIVCRVV 120
Query: 80 NVTLHADAETDEVYAQMTLQPYDKEALL------ASDMGLKQSRQPAE-------FFCKT 126
NV L A+ +TDEVY Q+TL P + ++L ++G ++ R + FCKT
Sbjct: 121 NVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKT 180
Query: 127 LTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
LTASDTSTHGGFSVPRRAAE F PLD+ Q P+QEL+A+DLH W FRHIYRG
Sbjct: 181 LTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRG 235
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 101/164 (61%), Gaps = 5/164 (3%)
Query: 22 SELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKET--DFIPSYPNLPSKLICMLH 79
+ELW ACA YFPQGH EQ+ AS + IP + NLP K++C +
Sbjct: 41 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVL 99
Query: 80 NVTLHADAETDEVYAQMTLQPYDKEALLAS-DMGLKQSRQP-AEFFCKTLTASDTSTHGG 137
+VTL A+ ETDEVYAQ+TLQP + ++ S D L + +P + F K LTASDTSTHGG
Sbjct: 100 SVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGG 159
Query: 138 FSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FSV R+ A + P LD + P QELVARDLH W F+HI+RG
Sbjct: 160 FSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRG 203
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 101/164 (61%), Gaps = 5/164 (3%)
Query: 22 SELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKET--DFIPSYPNLPSKLICMLH 79
+ELW ACA YFPQGH EQ+ AS + IP + NLP K++C +
Sbjct: 20 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVL 78
Query: 80 NVTLHADAETDEVYAQMTLQPYDKEALLAS-DMGLKQSRQP-AEFFCKTLTASDTSTHGG 137
+VTL A+ ETDEVYAQ+TLQP + ++ S D L + +P + F K LTASDTSTHGG
Sbjct: 79 SVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGG 138
Query: 138 FSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FSV R+ A + P LD + P QELVARDLH W F+HI+RG
Sbjct: 139 FSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRG 182
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 140 bits (352), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 6 NGFMSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQK--ETDF 63
+ F S+S+ + + +ELW CA YFPQGH EQ+ AS + ++
Sbjct: 8 DDFGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEE 67
Query: 64 IPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLAS--DMGLKQSRQPAE 121
IP + +LP K++C + +VTL A+ ETDEVYAQ+TLQP + ++ S + ++Q
Sbjct: 68 IPVF-DLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVGPTKQEFH 126
Query: 122 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
F K LTASDTSTHGGFSV R+ A + P LD + P QELV RDLH W F+HI+RG
Sbjct: 127 SFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRG 186
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP--NLPSKLICMLHN 80
ELW CA YFPQGH EQ+ AS Q + D P LP K++C + N
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQ-QVDLNTMKPLFVLPPKILCNVMN 70
Query: 81 VTLHADAETDEVYAQMTLQPYDKEAL--LASDMGLKQSRQP-AEFFCKTLTASDTSTHGG 137
V+L A+ +TDEVYAQ+TL P E ++ D + ++P F K LTASDTSTHGG
Sbjct: 71 VSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGG 130
Query: 138 FSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FSV R+ A + PPLD + Q P QELVA D+H W F+HI+RG
Sbjct: 131 FSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRG 174
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP--NLPSKLICMLHN 80
ELW CA YFPQGH EQ+ AS Q + D P LP K++C + N
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQ-QVDLNTMKPLFVLPPKILCNVMN 70
Query: 81 VTLHADAETDEVYAQMTLQPYDKEAL--LASDMGLKQSRQP-AEFFCKTLTASDTSTHGG 137
V+L A+ +TDEVYAQ+TL P E ++ D + ++P F K LTASDTSTHGG
Sbjct: 71 VSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGG 130
Query: 138 FSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
FSV R+ A + PPLD + Q P QELVA D+H W F+HI+RG
Sbjct: 131 FSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRG 174
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 100/178 (56%), Gaps = 19/178 (10%)
Query: 16 ERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLI 75
+ KS++ +LWHACA YF QGH+E A DF P +P ++
Sbjct: 3 QEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAP----PDF--HAPRVPPLIL 56
Query: 76 CMLHNVTLHADAETDEVYAQMTLQPY-------DKEALLA-----SDMGLKQSRQPAEFF 123
C + +V ADAETDEV+A++TL P + +A+L SD +PA F
Sbjct: 57 CRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASF- 115
Query: 124 CKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
KTLT SD + GGFSVPR AE IFP LD+S +PP Q ++A+D+H TW FRHIYRG
Sbjct: 116 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRG 173
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 1/173 (0%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQGH E V AS ++E + +
Sbjct: 13 LSGIIDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPIC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+ PSKL C + + L + +DE YA++TL P D ++ Q R F K LT
Sbjct: 73 DFPSKLQCRVIAIQLKVENNSDETYAEITLMP-DTTQVVIPTQNQNQFRPLVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
ASDTS HGGFSVP++ A + PPLD S P QE++A DLH N W FRHIYRG
Sbjct: 132 ASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRG 184
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQG+ E V AS ++E + +
Sbjct: 13 LSGIIDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPIC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+LPSKL C + + L + +DE+YA++TL P D ++ + R F K LT
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDEIYAEITLMP-DTTQVVIPTQSENRFRPLVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
ASDTS +GGFSVP++ A + PPLD S PAQE++A DLHDN W FRH YRG
Sbjct: 132 ASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRG 184
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Query: 15 GERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDF--IPSYPNLPS 72
G K ++ +LWHACA YFPQGH+E + DF +P +P
Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCV----DFGNLP----IPP 62
Query: 73 KLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMG-------LKQSRQPAEFFCK 125
++C + + ADAE+DEV+A++ L P + + + G + + + F K
Sbjct: 63 MVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAK 122
Query: 126 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
TLT SD + GGFSVPR AE IFP LD++ +PP Q ++A+D+H + W FRHIYRG
Sbjct: 123 TLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRG 178
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQGH E V S ++E + +
Sbjct: 13 LSGIIDGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPIC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+LPSKL C + + L + +DE YA++TL P D ++ Q R F K LT
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDETYAEITLMP-DTTQVVIPTQNENQFRPLVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
ASDTS HGGF VP++ A + P LD S PAQEL+A DLH N W F H YRG
Sbjct: 132 ASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRG 184
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVT 82
+LW+ CA YFPQGH E + S + E D I +LPSKL C + +
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 83 LHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPR 142
D TDEVYAQ++L P D ++ + + R FF K LTASD S GG +P+
Sbjct: 85 RKVDKNTDEVYAQISLMP-DTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPK 143
Query: 143 RAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
+ A + FPPLD S Q LVA+DL+ W+F+H++RG
Sbjct: 144 QYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRG 182
>AT1G34170.2 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 479
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVT 82
+LW+ CA YFPQGH E + S + E D I +LPSKL C + +
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 83 LHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPR 142
D TDEVYAQ++L P D ++ + + R FF K LTASD S GG +P+
Sbjct: 85 RKVDKNTDEVYAQISLMP-DTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPK 143
Query: 143 RAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
+ A + FPPLD S Q LVA+DL+ W+F+H++RG
Sbjct: 144 QYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRG 182
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVT 82
+LW+ CA YFPQGH E + S + E D I +LPSKL C + +
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 83 LHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPR 142
D TDEVYAQ++L P D ++ + + R FF K LTASD S GG +P+
Sbjct: 85 RKVDKNTDEVYAQISLMP-DTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPK 143
Query: 143 RAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
+ A + FPPLD S Q LVA+DL+ W+F+H++RG
Sbjct: 144 QYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRG 182
>AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);
transcription factor | chr1:16672582-16673952 REVERSE
Length = 222
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQGH E V AS ++E + +
Sbjct: 13 LSGIIDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+LPSKL C + + L + +DE Y ++TL P + ++ ++ Q R F K LT
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTE-NENQFRPIVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYR 180
ASDTS G FSVP + A + PPLD S PAQEL+A DLH N W F+H YR
Sbjct: 132 ASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR 183
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQG+ E V AS ++E + +
Sbjct: 13 LSGIIDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPIC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+LPSKL C + + L + +DE YA++TL P D ++ Q R F K LT
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDETYAEITLMP-DTTQVVIPTQSENQFRPLVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
ASDTS +GGF VP++ A + PPL PAQEL+A+DLH N W FRH YRG
Sbjct: 132 ASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRG 180
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 91/173 (52%), Gaps = 3/173 (1%)
Query: 9 MSNSAEGERKSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYP 68
+S +G + + +LW CA YFPQG+ E V AS ++E + +
Sbjct: 13 LSGIIDGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPIC 72
Query: 69 NLPSKLICMLHNVTLHADAETDEVYAQMTLQPYDKEALLASDMGLKQSRQPAEFFCKTLT 128
+LPSKL C + + L + +DE YA++TL P D ++ Q R F K LT
Sbjct: 73 DLPSKLQCRVIAIQLKVENNSDETYAEITLMP-DTTQVVIPTQNENQFRPLVNSFTKVLT 131
Query: 129 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
ASDTS GGF VP++ A + PPLD S P QEL+A DLH N W F H YRG
Sbjct: 132 ASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRG 182
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVT 82
+LW CA YFPQG+ E V AS ++E + + +LPSKL C + +
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 83 LHADAETDEVYAQMTLQP----YDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGF 138
L + +DE YA++TL P + ++ Q R F K LTASD S +G F
Sbjct: 87 LKVENNSDETYAKITLMPDTTVSENLQVVIPTQNENQFRPLVNSFTKVLTASDISANGVF 146
Query: 139 SVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
SVP++ A + PPLD S PAQEL+A DLH N W+FRH YRG
Sbjct: 147 SVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRG 189
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 18 KSINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICM 77
+ ++ +W ACA YFPQGH E + + P+ S + C+
Sbjct: 14 REVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCP-------LLSTLPSSTSPVPCI 66
Query: 78 LHNVTLHADAETDEVYAQMTLQPYDKEALLASDM-------GLKQSRQPAEFFCKTLTAS 130
+ ++ L AD TDEV+A + LQP ++ ++ G F K LT S
Sbjct: 67 ITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPS 126
Query: 131 DTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
D + GGFSVPR A+ +FP L+F + PP Q+L D+H W FRHIYRG
Sbjct: 127 DANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRG 177
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 42/59 (71%)
Query: 123 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRG 181
F K LTASDTSTHGGFSV R+ A + P LD + P QELVARDLH W F+HI+RG
Sbjct: 37 FVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRG 95