Jatropha Genome Database
- JcCA0286251.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0286251.20 - phase: 0
(160 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28910.3 | Symbols: | LOCATED IN: cellular_component unknown... 166 8e-42
AT4G28910.1 | Symbols: | LOCATED IN: cellular_component unknown... 166 8e-42
AT4G28910.2 | Symbols: | LOCATED IN: cellular_component unknown... 166 8e-42
AT3G29575.4 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ... 72 1e-13
AT3G29575.3 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ... 72 1e-13
AT3G29575.1 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ... 72 1e-13
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fami... 66 1e-11
AT1G13740.1 | Symbols: AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2) ... 64 5e-11
AT1G69260.1 | Symbols: AFP1 | AFP1 (ABI FIVE BINDING PROTEIN) | ... 63 8e-11
AT3G02140.1 | Symbols: TMAC2, AFP4 | TMAC2 (TWO OR MORE ABRES-CO... 57 4e-09
>AT4G28910.3 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 91/122 (74%), Gaps = 9/122 (7%)
Query: 14 YDGRVLER---VKGEGKQHITEEGSSSQTEEDVKGSSMTLRAKDSTAEGFSFDFSAIKPG 70
+ GRV KGEGKQ + EEGSS E G + L FSFDFSAIKPG
Sbjct: 289 FAGRVPSNSATAKGEGKQPVAEEGSSEDASERPTGDNSNLNT------AFSFDFSAIKPG 342
Query: 71 IASDLKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFV 130
+A+D+KFGG G+ PNLPWVSTTGSGP+GRTISGVTYRY+ANQI+IVCACHGSHMSPEEFV
Sbjct: 343 MAADVKFGGSGARPNLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFV 402
Query: 131 RH 132
RH
Sbjct: 403 RH 404
>AT4G28910.1 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 91/122 (74%), Gaps = 9/122 (7%)
Query: 14 YDGRVLER---VKGEGKQHITEEGSSSQTEEDVKGSSMTLRAKDSTAEGFSFDFSAIKPG 70
+ GRV KGEGKQ + EEGSS E G + L FSFDFSAIKPG
Sbjct: 289 FAGRVPSNSATAKGEGKQPVAEEGSSEDASERPTGDNSNLNT------AFSFDFSAIKPG 342
Query: 71 IASDLKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFV 130
+A+D+KFGG G+ PNLPWVSTTGSGP+GRTISGVTYRY+ANQI+IVCACHGSHMSPEEFV
Sbjct: 343 MAADVKFGGSGARPNLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFV 402
Query: 131 RH 132
RH
Sbjct: 403 RH 404
>AT4G28910.2 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 91/122 (74%), Gaps = 9/122 (7%)
Query: 14 YDGRVLER---VKGEGKQHITEEGSSSQTEEDVKGSSMTLRAKDSTAEGFSFDFSAIKPG 70
+ GRV KGEGKQ + EEGSS E G + L FSFDFSAIKPG
Sbjct: 289 FAGRVPSNSATAKGEGKQPVAEEGSSEDASERPTGDNSNLNT------AFSFDFSAIKPG 342
Query: 71 IASDLKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFV 130
+A+D+KFGG G+ PNLPWVSTTGSGP+GRTISGVTYRY+ANQI+IVCACHGSHMSPEEFV
Sbjct: 343 MAADVKFGGSGARPNLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFV 402
Query: 131 RH 132
RH
Sbjct: 403 RH 404
>AT3G29575.4 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
chr3:11382416-11383657 REVERSE
Length = 231
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 85 NLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
++P+VSTTG GPNG+ I+G YRY ++RIVC CHGS +SP EFV+H
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKH 210
>AT3G29575.3 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
chr3:11382416-11383657 REVERSE
Length = 231
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 85 NLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
++P+VSTTG GPNG+ I+G YRY ++RIVC CHGS +SP EFV+H
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKH 210
>AT3G29575.1 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
chr3:11382416-11383657 REVERSE
Length = 231
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 85 NLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
++P+VSTTG GPNG+ I+G YRY ++RIVC CHGS +SP EFV+H
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKH 210
>AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE
Length = 1294
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 78 GGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFVRH 132
G + +P V++TG+GP G+T++G YRYS ++I I+C CHG+ SP EF+ H
Sbjct: 212 GSLLPFAQMPCVTSTGNGPEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVH 266
>AT1G13740.1 | Symbols: AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2) |
chr1:4713969-4715158 FORWARD
Length = 348
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 85 NLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
++P V T G GPNGR + G+ Y+Y ++RI+C CHGS ++P EFV+H
Sbjct: 278 DMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKH 326
>AT1G69260.1 | Symbols: AFP1 | AFP1 (ABI FIVE BINDING PROTEIN) |
chr1:26039314-26040570 FORWARD
Length = 345
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 86 LPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
+P V T G GPNG+ + G+ YRY S ++RI+C CHG +SP +FV+H
Sbjct: 274 MPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKH 321
>AT3G02140.1 | Symbols: TMAC2, AFP4 | TMAC2 (TWO OR MORE
ABRES-CONTAINING GENE 2) | chr3:385478-386437 REVERSE
Length = 319
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 85 NLPWVSTTGSGPNGRTISGVTYRYSAN--QIRIVCACHGSHMSPEEFVRH 132
++P VST G +G+ + G Y Y N +++IVC CHGS +SP EFVRH
Sbjct: 240 DMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRH 289