Jatropha Genome Database

JcCA0286161.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.40 - phase: 0 /partial
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I | AMI1 (AMIDASE 1...   111   8e-26
AT5G09420.1 | Symbols: ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSI...    82   5e-17
AT3G17970.1 | Symbols: atToc64-III | atToc64-III (Arabidopsis th...    78   1e-15

>AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I | AMI1 (AMIDASE 1);
           amidase/ hydrolase, acting on carbon-nitrogen (but not
           peptide) bonds / indoleacetamide hydrolase |
           chr1:2884455-2886430 FORWARD
          Length = 425

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 65/77 (84%)

Query: 3   GILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSISL 62
           G+L IPTVPGP P L  +   LE FR++AFSLLSIAGVSGFCQVSIPLG+H++LP+S+SL
Sbjct: 345 GVLVIPTVPGPPPHLQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSL 404

Query: 63  LAKNGSDGFLLNVVQIL 79
           +AK GSDGFLL++V  L
Sbjct: 405 VAKYGSDGFLLSLVDSL 421


>AT5G09420.1 | Symbols: ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS
           THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF
           CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen
           ligase, with glutamine as amido-N-donor |
           chr5:2928316-2931750 FORWARD
          Length = 603

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 3   GILAIPTVPGPAPKLNTDPT-TLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSIS 61
           GIL IPTV  P P+LNT    +L  F  + ++L  IA +SG CQV+IPLG H D P+S+S
Sbjct: 384 GILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVS 443

Query: 62  LLAKNGSDGFLLNVVQILYDTLQEQVAVS 90
           LL   G D FLL+    +Y +LQ+Q  ++
Sbjct: 444 LLTYYGGDKFLLDTTLDVYASLQDQAKLA 472


>AT3G17970.1 | Symbols: atToc64-III | atToc64-III (Arabidopsis
           thaliana translocon at the outer membrane of
           chloroplasts 64-III); binding / carbon-nitrogen ligase,
           with glutamine as amido-N-donor | chr3:6148030-6151794
           FORWARD
          Length = 589

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           D GIL IPT+P   PKL +   T E ++ +A SLLSIA +SG CQV++PLG H+  P+S+
Sbjct: 369 DDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISV 428

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQEQVAV 89
           S + ++G D FLL+ VQ +Y +LQE  ++
Sbjct: 429 SFIGRHGGDRFLLDTVQTMYPSLQEYSSI 457