Jatropha Genome Database

JcCA0286161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.10 - phase: 0 
         (88 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I | AMI1 (AMIDASE 1...   103   2e-23
AT3G17970.1 | Symbols: atToc64-III | atToc64-III (Arabidopsis th...    87   2e-18
AT5G09420.1 | Symbols: ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSI...    86   5e-18

>AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I | AMI1 (AMIDASE
          1); amidase/ hydrolase, acting on carbon-nitrogen (but
          not peptide) bonds / indoleacetamide hydrolase |
          chr1:2884455-2886430 FORWARD
          Length = 425

 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 1  MARNPDYGAFMEKFVLKPTNSSDELP-LNGLTFAVKDIFXVDGYVTGFGNPDWARTHLAA 59
          MA N D+GAF+EK  + PT++S   P L GLTFA+KDIF V+G VTGFGNPDW RTH AA
Sbjct: 1  MATNNDFGAFIEKVTISPTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAA 60

Query: 60 TSTAPAVLAILREXATCIGKTVMDEMAY 87
          TSTAP V ++L   AT +G T+MDEMAY
Sbjct: 61 TSTAPVVSSLLEAGATALGITIMDEMAY 88


>AT3G17970.1 | Symbols: atToc64-III | atToc64-III (Arabidopsis
           thaliana translocon at the outer membrane of
           chloroplasts 64-III); binding / carbon-nitrogen ligase,
           with glutamine as amido-N-donor | chr3:6148030-6151794
           FORWARD
          Length = 589

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 29  GLTFAVKDIFXVDGYVTGFGNPDWARTHLAATSTAPAVLAILREXATCIGKTVMDEMAY 87
           GLTFAV D+F + GYVTGFG+PDW RTH AA+ST+P V  ++   ATC+GKTV+DE A+
Sbjct: 60  GLTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAF 118


>AT5G09420.1 | Symbols: ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS
           THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF
           CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen
           ligase, with glutamine as amido-N-donor |
           chr5:2928316-2931750 FORWARD
          Length = 603

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 3   RNPDYGAFMEKFVL----KPTNSSDELPLNGLTFAVKDIFXVDGYVTGFGNPDWARTHLA 58
           R  D+GAF+++F L     P   + +  L+GLTF++ D F V  Y+TGFG P W +TH A
Sbjct: 43  REEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEA 102

Query: 59  ATSTAPAVLAILREXATCIGKTVMDEMAY 87
           A  TA  V  +L+  ATC+GKT+MDE+ +
Sbjct: 103 AEKTAVVVTTLLKNGATCVGKTIMDELGF 131