Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (221 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21530.1 | Symbols:  | nucleotide binding | chr4:11450743-114...   308   1e-84
AT5G25150.1 | Symbols: TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nu...    50   1e-06

>AT4G21530.1 | Symbols:  | nucleotide binding |
           chr4:11450743-11455862 FORWARD
          Length = 777

 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 145/199 (72%), Positives = 163/199 (81%)

Query: 1   METDEEQPVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISP 60
           M +DEE+ ++PFQLQFDKP+  QIKIAEWNPEKDLLAMVTEDSK+LLHRFNWQRLWTISP
Sbjct: 4   MASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 63

Query: 61  GKCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQLKRI 120
           GK +TSLCWRPDGKAIAVGLEDGTISLHDVENGKLLR+LK H VAVVCLNWEEDGQ    
Sbjct: 64  GKPVTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTD 123

Query: 121 DCCNFSTYEDXXXXXXXXXXXXXXXXGVVSGDAGFMDDNEDSYQELSNSSYQQFNILCSA 180
           +  NFS YED                G+V+GD+ FMDD EDS  ELSN+S+++FNILC+ 
Sbjct: 124 ESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTG 183

Query: 181 DRDGSICFSIFGIFPIGKI 199
           DRDG+ICFSIFGIF IGKI
Sbjct: 184 DRDGNICFSIFGIFQIGKI 202


>AT5G25150.1 | Symbols: TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5);
           nucleotide binding / transcription regulator |
           chr5:8677117-8682058 FORWARD
          Length = 669

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 22  SQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISPGKCIT----------SLCWRP 71
           S +   +W+P  + +A  + D  V        RLW +  G+C+           SL   P
Sbjct: 503 SDVDCVQWHPNCNYIATGSSDKTV--------RLWDVQTGECVRIFIGHRSMVLSLAMSP 554

Query: 72  DGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQL 117
           DG+ +A G EDGTI + D+   + +  L  H   V  L++  +G L
Sbjct: 555 DGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSL 600