Jatropha Genome Database

JcCA0285281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285281.10 + phase: 0 /partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39570.1 | Symbols:  | ACT domain-containing protein | chr2:1...   169   6e-43
AT2G36840.1 | Symbols:  | ACT domain-containing protein | chr2:1...   129   6e-31

>AT2G39570.1 | Symbols:  | ACT domain-containing protein |
           chr2:16507963-16509741 FORWARD
          Length = 411

 Score =  169 bits (427), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 97/127 (76%), Gaps = 3/127 (2%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI  +DD VLI+  K S DP+VVTVNCPD++GLG  LCRIILEFGLSITRADFSTDGRW
Sbjct: 1   MGI-LNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFV 120
           CYIVFWV PD   SS K+DWDSLKNRL  A P CL  FYF  +SN    P LYLLKF   
Sbjct: 60  CYIVFWVTPD--ISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCR 117

Query: 121 DRKGLLH 127
           DRKGLLH
Sbjct: 118 DRKGLLH 124


>AT2G36840.1 | Symbols:  | ACT domain-containing protein |
           chr2:15451834-15453550 REVERSE
          Length = 410

 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 12/133 (9%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI  SDDVV+I  ++   DPSV+T+NCPDK GLGCDLCRI+L FGL+I R D STDG+W
Sbjct: 1   MGI-LSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYF------DQKSNGPSLPPLYL 114
           CY+VFWV+    +      W+ LK RL  ASP     F        D +S  P LP L+L
Sbjct: 60  CYLVFWVIGKPNTR-----WNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFL 114

Query: 115 LKFCFVDRKGLLH 127
           LK    DR GLL+
Sbjct: 115 LKLACSDRTGLLY 127