Jatropha Genome Database

JcCA0285211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285211.10 + phase: 0 
         (116 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15160.1 | Symbols:  | unknown protein | chr3:5104582-5108279...   137   2e-33

>AT3G15160.1 | Symbols:  | unknown protein | chr3:5104582-5108279
           FORWARD
          Length = 562

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 90/118 (76%), Gaps = 6/118 (5%)

Query: 1   MADRDRGDWEFYLRTLSSSARDSNLASDPASDPSLLQSIKRLYELCKQENSEDLVARVYP 60
           M+D++ GDW+FYLR LS+SARDS   +DPASDPS+LQS+K+L+  CK E S+DLVAR+YP
Sbjct: 1   MSDQE-GDWDFYLRILSNSARDS---TDPASDPSILQSVKKLHGFCKMEKSDDLVARIYP 56

Query: 61  QINRLFQRSVNSLAQSKS--SYGXXXXXXXXXXXXXGEVVLHDADPSLKTFFRSCLSR 116
           Q N++F RSV SL+QS+S  S G             G++VLHD+DPSL+TFFRSCLSR
Sbjct: 57  QFNKVFHRSVASLSQSESGASKGLLLLAILQFFLDFGDMVLHDSDPSLRTFFRSCLSR 114