Jatropha Genome Database

JcCA0283321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283321.10 - phase: 0 /partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78510.1 | Symbols: SPS1 | SPS1 (solanesyl diphosphate syntha...    56   4e-09
AT1G17050.1 | Symbols: SPS2 | SPS2 (Solanesyl diphosphate syntha...    54   2e-08

>AT1G78510.1 | Symbols: SPS1 | SPS1 (solanesyl diphosphate synthase
           1); trans-octaprenyltranstransferase |
           chr1:29535410-29537163 REVERSE
          Length = 406

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 2   MSMTCRSIDFGRTLLDLAACGCSSNASIDRYSVRNYAKFASXXXXXXXXXXXXXXXXXXV 61
           M  +CR+ID G  ++   ACGC       R    + AK                     V
Sbjct: 1   MMTSCRNIDLGTMMM---ACGCG------RRQFPSLAKTVCKFTSSNRSYGGLVGSCKAV 51

Query: 62  SSTKTPETLPNGVAQGPVTLLDLK-ESKGPISLKNLFEVVADDLQTLNHNLRS 113
            +     +L NG+ Q      DLK ESK PISL  LFE+VA DLQTLN NL S
Sbjct: 52  PTKSKEISLLNGIGQSQTVSFDLKQESKQPISLVTLFELVAVDLQTLNDNLLS 104


>AT1G17050.1 | Symbols: SPS2 | SPS2 (Solanesyl diphosphate synthase
           2); trans-octaprenyltranstransferase |
           chr1:5829289-5831215 FORWARD
          Length = 417

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 9/118 (7%)

Query: 2   MSMTCRSIDFGRTLLDLAACGCSSNASIDRYSVRNYAKFASXXXXXXXXXXXXXXXXXXV 61
           M M+CR+ID G ++LD +    SS+++  R+   N +K                      
Sbjct: 1   MMMSCRNIDLGTSVLDHSC---SSSSTSRRFLFGNSSKTVCMIGGRSCVGNLVFLRRDLA 57

Query: 62  SSTKTP-----ETLPNGVAQGPVTLLDLK-ESKGPISLKNLFEVVADDLQTLNHNLRS 113
           +    P      +L NG+ Q    +L+L+ ES+ PISL+ LFEVVADDLQ LN NL S
Sbjct: 58  TCRAVPAKSKENSLVNGIGQDQTVMLNLRQESRKPISLETLFEVVADDLQRLNDNLLS 115