Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD    232   2e-61

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 22/240 (9%)

Query: 18  VNNFDD-------CVAAFLLQRAFNMYEFEDVRKLAAELCGRIHPQVLFPIVSSLLEDAA 70
           VN++ D       C+A F+L+RAF+ +EFE+VRKL+AELCGR+HPQVLFP V   LE A 
Sbjct: 733 VNDYQDIKFEDCQCIATFILERAFSKFEFEEVRKLSAELCGRLHPQVLFPTVLLQLEKAT 792

Query: 71  KCEDVLIIKACLFAICTSLVVRGRESVSHPIIIQIRKTIETVLLWPSLDGDEVSKAQHGC 130
           + +D L IKACLF+ICTSL+VRG ES+SH +  +IRK +E +LLWPS++ DE+SK QHGC
Sbjct: 793 EIQDSLKIKACLFSICTSLMVRGWESLSHRVTPKIRKVLENILLWPSVE-DEISKVQHGC 851

Query: 131 IDCLALMICAELPNLESFKNS--EKFSLLGKTSYAGWYLIPRNSILAYVIHQLTSDK--- 185
           IDCLALMICAEL +L+S K S  EK    GK + +G+      S+L Y IH L  D+   
Sbjct: 852 IDCLALMICAELQHLKSSKTSGGEKIRSTGKDT-SGY------SVLDYTIHCLIEDRSNC 904

Query: 186 NEVPVCTLTSENCEHDAPVLCSFRLCMANVLLSACQKLSDSGKKLFARETLPRLISSVEV 245
           + +P  +     CE+  P+   FRLCMANV++SACQK  +S KK FAR+ LP LI S++V
Sbjct: 905 SSIPKLSTDILTCENPLPI--PFRLCMANVIISACQKNPESSKKTFARKALPPLIHSLKV 962