Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281241.10 - phase: 0 /partial
         (108 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01310.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...   155   5e-39

>AT5G01310.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr5:125304-128960 FORWARD
          Length = 912

 Score =  155 bits (392), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 86/100 (86%), Gaps = 1/100 (1%)

Query: 2   PSMRQLHLHVISQDFNSDNLKNKKHWNSFTTAFFRDSVDVIEEIRNHGKATLKDDDSYLS 61
           PSMRQLHLHVISQDFNSD+LKNKKHWNSFTT+FFRDSVDV+EE+ + GKA +  +D  L 
Sbjct: 809 PSMRQLHLHVISQDFNSDSLKNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED-LLK 867

Query: 62  TELRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRLV 101
            ELRC+RCRSAHPNIP+LKSH+++C + FP  LL+N RLV
Sbjct: 868 GELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLLQNNRLV 907