Jatropha Genome Database

JcCA0281201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.20 - phase: 0 /partial/short
         (34 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64860.1 | Symbols: DPE1 | DPE1 (DISPROPORTIONATING ENZYME); ...    55   7e-09

>AT5G64860.1 | Symbols: DPE1 | DPE1 (DISPROPORTIONATING ENZYME);
           4-alpha-glucanotransferase/ catalytic/ cation binding |
           chr5:25925373-25928788 REVERSE
          Length = 576

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 2   GNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           GNWGWRIPSS SFD +  E+ RLR LLS+YGR+
Sbjct: 544 GNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576