Jatropha Genome Database

JcCA0281201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.10 - phase: 0 /partial
         (374 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01880.1 | Symbols:  | methyltransferase | chr4:810810-812882...   449   e-126

>AT4G01880.1 | Symbols:  | methyltransferase | chr4:810810-812882
           REVERSE
          Length = 453

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 257/334 (76%), Gaps = 18/334 (5%)

Query: 36  NRCKFWLTRKNRFCANGRLNDSPFCGNHKSRSDGQWIPCPIDPSHSVLKENLDGHVTRCP 95
           NRC FWL +K R CAN R+  S FCGNH  R +GQWIPCPIDPSHSVL+ENL+ HV RCP
Sbjct: 7   NRCSFWLPKKKRSCANTRIESSMFCGNHSQRLEGQWIPCPIDPSHSVLQENLEWHVKRCP 66

Query: 96  LLKQTQCLSLQPFYQKGINAGKEEEED-------ITSEMKRNAIYGMTVSEFCKLIKKIE 148
           LLKQT  LS Q FYQKGINAG +EEE+       +TSEMKRN +Y M+VS+F +LIKKIE
Sbjct: 67  LLKQTVELSGQRFYQKGINAGNDEEEEKMGSCSLVTSEMKRNLLYSMSVSKFHQLIKKIE 126

Query: 149 SIHALICKDIVESYKMPEACNVWIRREIDRKLPFQEKHVKQQASILGNLEDFGALKSYSE 208
            +H  ICKDI +SY  PEACN+W  +EIDRKLPFQEKHV QQ SILGNLE+ G LK  + 
Sbjct: 127 DVHGGICKDIEDSYLSPEACNIWFNKEIDRKLPFQEKHVLQQGSILGNLEEIGVLKRCNI 186

Query: 209 KEQCDGEGLYL--DNAAPAVVEFGAGRGYLTQMLADCYGIQMVFLVERKSYKLKADRSLR 266
             +C    L    DN APAVVEFGAGRGYLTQMLADCYGI+ V+LVERKSYKLKADRSLR
Sbjct: 187 NVECCESDLEEKDDNTAPAVVEFGAGRGYLTQMLADCYGIKKVYLVERKSYKLKADRSLR 246

Query: 267 QKDNLTLERLRIDIEDLNLNAVESLLGLPFLAIGKHLCGPATDLTLRCCLPEQSSETTME 326
           QK++L LER+RIDIEDLNLNAVESL G+P++A+GKHLCGPATDL+LRCCL  Q  E+ + 
Sbjct: 247 QKESLVLERMRIDIEDLNLNAVESLHGVPYVAVGKHLCGPATDLSLRCCLSRQDGESPV- 305

Query: 327 KCSVNHSLKGLAIATCCHHLCQWKHYTSNCHYFL 360
                  L+GLAIATCCHHL QWK Y  N  Y L
Sbjct: 306 -------LRGLAIATCCHHLSQWKSYI-NKEYIL 331