Jatropha Genome Database

JcCA0280911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280911.10 - phase: 0 
         (203 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06790.2 | Symbols:  | RNA polymerase Rpb7 N-terminal domain-...   197   5e-51
AT1G06790.1 | Symbols:  | RNA polymerase Rpb7 N-terminal domain-...   191   3e-49

>AT1G06790.2 | Symbols:  | RNA polymerase Rpb7 N-terminal
           domain-containing protein | chr1:2087645-2089039 FORWARD
          Length = 189

 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 133/193 (68%), Gaps = 12/193 (6%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EH+            +DAIK  L+N+FLDK         V+++LGLC+SIYD+
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDK---------VLADLGLCVSIYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
           +++EGGF+ PGDGA+TY V  R+VVFRPFVGE I AK KES  +GLRL+LGFFDDI++PA
Sbjct: 52  KSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPA 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQQE- 179
             +PKP    P+   R ++ W+W+Y G     + +D   +IKF+V+S+ YP VP E+ E 
Sbjct: 112 PLMPKPNRCEPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAED 170

Query: 180 -KPFAPMMITVSS 191
            KPFAPM++TVSS
Sbjct: 171 AKPFAPMVVTVSS 183


>AT1G06790.1 | Symbols:  | RNA polymerase Rpb7 N-terminal
           domain-containing protein | chr1:2087645-2089287 FORWARD
          Length = 204

 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 130/190 (68%), Gaps = 12/190 (6%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EH+            +DAIK  L+N+FLDK         V+++LGLC+SIYD+
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDK---------VLADLGLCVSIYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
           +++EGGF+ PGDGA+TY V  R+VVFRPFVGE I AK KES  +GLRL+LGFFDDI++PA
Sbjct: 52  KSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPA 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQQE- 179
             +PKP    P+   R ++ W+W+Y G     + +D   +IKF+V+S+ YP VP E+ E 
Sbjct: 112 PLMPKPNRCEPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAED 170

Query: 180 -KPFAPMMIT 188
            KPFAPM++T
Sbjct: 171 AKPFAPMVVT 180