Jatropha Genome Database
- JcCA0280821.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0280821.20 - phase: 2 /partial
(69 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G29760.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 120 1e-28
AT5G06540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 115 5e-27
AT4G33990.1 | Symbols: EMB2758 | EMB2758 (embryo defective 2758)... 113 3e-26
AT3G56550.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 112 3e-26
AT5G66520.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 111 7e-26
AT1G59720.1 | Symbols: CRR28 | CRR28 (CHLORORESPIRATORY REDUCTIO... 110 1e-25
AT1G08070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 109 3e-25
AT3G08820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 108 6e-25
AT3G57430.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 108 8e-25
AT3G03580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 108 9e-25
AT4G37380.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 107 1e-24
AT1G56690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 106 3e-24
AT1G47580.1 | Symbols: | lipoyltransferase, putative | chr1:174... 105 4e-24
AT1G18485.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 105 5e-24
AT4G33170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 105 6e-24
AT3G62890.1 | Symbols: | binding | chr3:23246168-23247973 FORWARD 104 9e-24
AT5G40405.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 104 1e-23
AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 104 1e-23
AT5G15340.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 103 2e-23
AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 103 2e-23
AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 102 4e-23
AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 102 4e-23
AT1G16480.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 102 4e-23
AT1G31920.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 101 8e-23
AT3G26782.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 101 1e-22
AT2G15690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 100 1e-22
AT4G15720.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 100 2e-22
AT1G11290.1 | Symbols: CRR22 | CRR22 (CHLORORESPIRATORY REDUCTIO... 100 2e-22
AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 100 2e-22
AT5G48910.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 100 2e-22
AT4G14050.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 4e-22
AT5G16860.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 5e-22
AT4G13650.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 6e-22
AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 7e-22
AT3G47530.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 98 9e-22
AT4G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 98 1e-21
AT5G46460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 98 1e-21
AT4G14850.1 | Symbols: LOI1 | LOI1 (lovastatin insensitive 1) | ... 97 1e-21
AT3G46790.1 | Symbols: CRR2 | CRR2 (CHLORORESPIRATORY REDUCTION ... 97 2e-21
AT3G23330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 2e-21
AT4G16835.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 2e-21
AT3G49710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 3e-21
AT2G27610.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 3e-21
AT3G12770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 4e-21
AT1G25360.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 5e-21
AT3G22690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 5e-21
AT4G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 6e-21
AT1G04840.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 6e-21
AT2G41080.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 7e-21
AT5G52630.1 | Symbols: MEF1 | MEF1 (MITOCHONDRIAL RNA EDITING FA... 95 8e-21
AT3G11460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 95 8e-21
AT5G39680.1 | Symbols: EMB2744 | EMB2744 (EMBRYO DEFECTIVE 2744)... 95 1e-20
AT5G50990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 94 1e-20
AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo defective 2261)... 94 2e-20
AT3G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 94 2e-20
AT2G33760.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 94 2e-20
AT2G02980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 94 2e-20
AT2G01510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 93 3e-20
AT3G02010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 92 5e-20
AT1G20230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 92 8e-20
AT5G13270.1 | Symbols: RARE1 | pentatricopeptide (PPR) repeat-co... 91 1e-19
AT3G14330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 91 2e-19
AT2G03880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 91 2e-19
AT5G09950.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 90 3e-19
AT4G18750.1 | Symbols: DOT4 | DOT4 (DEFECTIVELY ORGANIZED TRIBUT... 90 3e-19
AT5G40410.1 | Symbols: | INVOLVED IN: biological_process unknow... 89 5e-19
AT1G74630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 89 7e-19
AT5G65570.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 88 1e-18
AT5G13230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 87 2e-18
AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant structures; EXP... 87 3e-18
AT4G32450.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 5e-18
AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant structures; EXP... 86 5e-18
AT2G25580.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 86 7e-18
AT4G37170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 1e-17
AT5G44230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 84 2e-17
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | EMB175 (EMBRYO ... 84 3e-17
AT1G19720.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 83 4e-17
AT5G04780.1 | Symbols: | INVOLVED IN: biological_process unknow... 82 7e-17
AT5G50390.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 82 8e-17
AT3G15130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 81 1e-16
AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 2e-16
AT1G71420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 78 9e-16
AT3G24000.1 | Symbols: | INVOLVED IN: biological_process unknow... 76 5e-15
AT1G15510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 2e-14
AT5G52850.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 8e-13
AT2G34370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 3e-12
AT4G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 66 4e-12
AT1G29710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 65 6e-12
AT3G61170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 2e-09
>AT2G29760.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:12712884-12715100 FORWARD
Length = 738
Score = 120 bits (302), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAI YGL+ T+AP IR++KNLRVCGDCH V K+IS++YDREIIVRDR RFH F N
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 730 GQCSCNDFW 738
>AT5G06540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1999181-2001049 REVERSE
Length = 622
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 59/69 (85%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIAYG+MKTK TIRIVKNLRVC DCH VTK+IS++Y RE+IVRDR RFH F N
Sbjct: 554 HSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRN 613
Query: 61 GTCSCKDYW 69
G CSC+DYW
Sbjct: 614 GVCSCRDYW 622
>AT4G33990.1 | Symbols: EMB2758 | EMB2758 (embryo defective 2758) |
chr4:16290141-16292612 REVERSE
Length = 823
Score = 113 bits (282), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/69 (73%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+ L+ T A TIRI KNLRVCGDCH VTK ISKI +REIIVRD RFH F N
Sbjct: 755 HSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 814
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 815 GVCSCGDYW 823
>AT3G56550.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:20952896-20954641 REVERSE
Length = 581
Score = 112 bits (281), Expect = 3e-26, Method: Composition-based stats.
Identities = 49/69 (71%), Positives = 56/69 (81%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIAYGLM+T A T+RI KNLRVC DCH TK +SK ++REIIVRDRVRFH F +
Sbjct: 513 HSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFAD 572
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 573 GICSCNDYW 581
>AT5G66520.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26551879-26553741 FORWARD
Length = 620
Score = 111 bits (278), Expect = 7e-26, Method: Composition-based stats.
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAI YGL+KTK IRI+KNLRVC DCH+VTK+ISKIY R+I++RDR RFH F +
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 612 GKCSCGDYW 620
>AT1G59720.1 | Symbols: CRR28 | CRR28 (CHLORORESPIRATORY
REDUCTION28); endonuclease | chr1:21939868-21941784
REVERSE
Length = 638
Score = 110 bits (276), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/69 (69%), Positives = 56/69 (81%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ IRI KNLRVC DCHEVTK+ISK+++ EIIVRDRVRFH F +
Sbjct: 570 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKD 629
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 630 GSCSCLDYW 638
>AT1G08070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2514374-2516599 REVERSE
Length = 741
Score = 109 bits (273), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+GL+ TK + IVKNLRVC +CHE TK+ISKIY REII RDR RFH F +
Sbjct: 673 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 733 GVCSCNDYW 741
>AT3G08820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:2677122-2679179 REVERSE
Length = 685
Score = 108 bits (271), Expect = 6e-25, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A GL+ T IR+VKNLRVCGDCHEV K+ISKI REI+VRD RFH F N
Sbjct: 617 HSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTN 676
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 677 GSCSCNDYW 685
>AT3G57430.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:21255731-21258403 REVERSE
Length = 890
Score = 108 bits (270), Expect = 8e-25, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+G++ T IR+ KNLRVC DCH TK ISKI DREII+RD RFH+F N
Sbjct: 822 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 881
Query: 61 GTCSCKDYW 69
GTCSC DYW
Sbjct: 882 GTCSCGDYW 890
>AT3G03580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:860695-863343 REVERSE
Length = 882
Score = 108 bits (269), Expect = 9e-25, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 57/69 (82%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ T+ ++++KNLRVCGDCHEVTK+ISKI REI+VRD RFH F +
Sbjct: 814 HSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKD 873
Query: 61 GTCSCKDYW 69
GTCSCKD W
Sbjct: 874 GTCSCKDRW 882
>AT4G37380.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:17572040-17573938 REVERSE
Length = 632
Score = 107 bits (268), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 56/69 (81%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIAYGL+ TK + ++I KNLRVC DCH VTK+ISKI R+I++RDR RFH F +
Sbjct: 564 HSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTD 623
Query: 61 GTCSCKDYW 69
G+CSC D+W
Sbjct: 624 GSCSCGDFW 632
>AT1G56690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:21253817-21255931 FORWARD
Length = 704
Score = 106 bits (265), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+AYGL+K IR++KNLRVCGDCH K+ISK+ +REII+RD RFH F N
Sbjct: 636 HSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNN 695
Query: 61 GTCSCKDYW 69
G CSC+DYW
Sbjct: 696 GECSCRDYW 704
>AT1G47580.1 | Symbols: | lipoyltransferase, putative |
chr1:17484753-17486387 FORWARD
Length = 416
Score = 105 bits (263), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+G++ T TIR++KNLR+CGDCH KI+S I DREIIVRD RFH F +
Sbjct: 348 HSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRD 407
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 408 GNCSCGDYW 416
>AT1G18485.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6363172-6366084 FORWARD
Length = 970
Score = 105 bits (263), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ YGL+KT TIR+ KNLR+C DCH K+ISK+ +REI+VRD RFH F N
Sbjct: 902 HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 961
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 962 GVCSCGDYW 970
>AT4G33170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15995701-15998673 REVERSE
Length = 990
Score = 105 bits (262), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GL+ T IR++KNLRVCGDCH K I+K+Y+REI++RD RFH+F +
Sbjct: 922 HSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKD 981
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 982 GICSCGDYW 990
>AT3G62890.1 | Symbols: | binding | chr3:23246168-23247973 FORWARD
Length = 573
Score = 104 bits (260), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 57/69 (82%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+ LMKT+ +RI+KNLR+CGDCH V K+ISK++ REI+VRD RFH F +
Sbjct: 505 HSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRD 564
Query: 61 GTCSCKDYW 69
G+CSC+D+W
Sbjct: 565 GSCSCRDFW 573
>AT5G40405.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT5G66520.1); Has
12548 Blast hits to 5076 proteins in 168 species: Archae
- 0; Bacteria - 2; Metazoa - 87; Fungi - 66; Plants -
12146; Viruses - 0; Other Eukaryotes - 247 (source: NCBI
BLink). | chr5:16169315-16171153 FORWARD
Length = 612
Score = 104 bits (260), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 55/69 (79%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+ AIA+G+M K IRIVKNLRVCGDCH+V+ +ISKI++REIIVRDR RFH F +
Sbjct: 544 HSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKD 603
Query: 61 GTCSCKDYW 69
G CSC +W
Sbjct: 604 GHCSCNGFW 612
>AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:14962617-14964995 REVERSE
Length = 792
Score = 104 bits (259), Expect = 1e-23, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ T+ IRI+KNLRVC DCH VTK+ISKI +R I+VRD RFH F +
Sbjct: 724 HSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKD 783
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 784 GVCSCGDYW 792
>AT5G15340.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4982273-4984144 REVERSE
Length = 623
Score = 103 bits (258), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ +GL++TK + + KNLR+C DCH KI+SK+YDREII+RDR RFH+F
Sbjct: 555 HSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKG 614
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 615 GSCSCSDYW 623
>AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: CRR28
(CHLORORESPIRATORY REDUCTION28); endonuclease
(TAIR:AT1G59720.1); Has 14270 Blast hits to 5372
proteins in 184 species: Archae - 1; Bacteria - 4;
Metazoa - 153; Fungi - 82; Plants - 13714; Viruses - 0;
Other Eukaryotes - 316 (source: NCBI BLink). |
chr4:11245976-11247763 FORWARD
Length = 595
Score = 103 bits (257), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 55/69 (79%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++AIA+ L+ T + I +VKNLRVC DCH K++SK+Y+REI+VRDR RFH F N
Sbjct: 527 HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586
Query: 61 GTCSCKDYW 69
G+CSC+DYW
Sbjct: 587 GSCSCQDYW 595
>AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:9383602-9385962 FORWARD
Length = 786
Score = 102 bits (255), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+GL+ T T+RI+KNLRVC DCH K ISK+ REIIVRD RFH F +
Sbjct: 718 HSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKD 777
Query: 61 GTCSCKDYW 69
G CSC+DYW
Sbjct: 778 GFCSCRDYW 786
>AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G33170.1); Has 16184 Blast hits to 5257
proteins in 175 species: Archae - 0; Bacteria - 4;
Metazoa - 118; Fungi - 47; Plants - 15742; Viruses - 0;
Other Eukaryotes - 273 (source: NCBI BLink). |
chr4:11246375-11247763 FORWARD
Length = 462
Score = 102 bits (255), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 55/69 (79%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++AIA+ L+ T + I +VKNLRVC DCH K++SK+Y+REI+VRDR RFH F N
Sbjct: 394 HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 453
Query: 61 GTCSCKDYW 69
G+CSC+DYW
Sbjct: 454 GSCSCQDYW 462
>AT1G16480.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G13650.1). | chr1:5625843-5628656
REVERSE
Length = 937
Score = 102 bits (254), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+AY LM T +T+RI KNLR+C DCH V K +S++ R I++RD+ RFH F
Sbjct: 869 HSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFER 928
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 929 GLCSCKDYW 937
>AT1G31920.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11461864-11463684 REVERSE
Length = 606
Score = 101 bits (252), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HS+++AIA+GL+ T + I+I +NLR+C DCH TK IS IY+REI+VRDR RFH F
Sbjct: 538 HSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKG 597
Query: 61 GTCSCKDYW 69
GTCSCKDYW
Sbjct: 598 GTCSCKDYW 606
>AT3G26782.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
seed; EXPRESSED DURING: E expanded cotyledon stage;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT3G23330.1); Has 13812 Blast hits to 4961
proteins in 140 species: Archae - 0; Bacteria - 2;
Metazoa - 58; Fungi - 30; Plants - 13522; Viruses - 0;
Other Eukaryotes - 200 (source: NCBI BLink). |
chr3:9850594-9852682 FORWARD
Length = 659
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+G+M T +T+ +VKNLRVC DCH V K+ISKI DRE +VRD RFH F +
Sbjct: 591 HSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 651 GGCSCGDYW 659
>AT2G15690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:6831855-6833594 REVERSE
Length = 579
Score = 100 bits (250), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIAYG++ T T+ I+KNLRVCGDCH KI+SKI R +IVRD RFH F +
Sbjct: 511 HSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKD 570
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 571 GKCSCGDYW 579
>AT4G15720.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8949569-8951419 FORWARD
Length = 616
Score = 100 bits (250), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
H ERLA+AYGL+ A +TIRI+ NLR+C DCHE K+IS+I +REI+VRD RFH F N
Sbjct: 548 HCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKN 607
Query: 61 GTCSCKDYW 69
G+C+C+DYW
Sbjct: 608 GSCTCRDYW 616
>AT1G11290.1 | Symbols: CRR22 | CRR22 (CHLORORESPIRATORY
REDUCTION22); endonuclease | chr1:3791454-3793883
REVERSE
Length = 809
Score = 100 bits (249), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 50/69 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAI++GL+ T A TI + KNLRVC DCH TK IS + REI+VRD RFH F N
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 801 GACSCGDYW 809
>AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3035443-3037560 FORWARD
Length = 705
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+AY L+K IR++KNLRVC DCH KIISK+ +REII+RD RFH F N
Sbjct: 637 HSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRN 696
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 697 GECSCKDYW 705
>AT5G48910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:19832969-19834909 REVERSE
Length = 646
Score = 100 bits (248), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++A A+GL+ T IRIVKNLR+C DCH K+ISK+Y R+I VRDR RFH F +
Sbjct: 578 HSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQD 637
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 638 GSCSCMDYW 646
>AT4G14050.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8103645-8105483 REVERSE
Length = 612
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSER A+AYGL+K IRIVKNLRVCGDCH V K IS+I +REIIVRD R+H F
Sbjct: 544 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 603
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 604 GKCSCNDFW 612
>AT5G16860.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5543834-5546386 FORWARD
Length = 850
Score = 99.0 bits (245), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+AYG++ T A IRI KNLRVCGDCH +S+I D +II+RD RFH F N
Sbjct: 782 HSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKN 841
Query: 61 GTCSCKDYW 69
G+CSCK YW
Sbjct: 842 GSCSCKGYW 850
>AT4G13650.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:7939611-7942898 REVERSE
Length = 1064
Score = 99.0 bits (245), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAI++GL+ A I ++KNLRVC DCH K +SK+ +REIIVRD RFH F
Sbjct: 996 HSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEG 1055
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 1056 GACSCKDYW 1064
>AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:25918314-25920545 FORWARD
Length = 743
Score = 98.6 bits (244), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ + IR+ KNLRVC DCH TK IS + REI+VRD VRFH+F +
Sbjct: 675 HSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734
Query: 61 GTCSCKDYW 69
GTCSC D+W
Sbjct: 735 GTCSCGDFW 743
>AT3G47530.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:17517382-17519157 REVERSE
Length = 591
Score = 98.2 bits (243), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 50/69 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+G++ T TIR+ KNLR C DCH K +S +YDR +IVRDR RFH F
Sbjct: 523 HSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKG 582
Query: 61 GTCSCKDYW 69
G+CSC D+W
Sbjct: 583 GSCSCNDFW 591
>AT4G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8507794-8510038 REVERSE
Length = 722
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 6/75 (8%)
Query: 1 HSERLAIAYGLMKTK------APATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVR 54
HSE+LA+ +GLM + + IRIVKNLRVC DCH K++SK+Y+REIIVRDR R
Sbjct: 648 HSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTR 707
Query: 55 FHKFVNGTCSCKDYW 69
FH + NG CSC+DYW
Sbjct: 708 FHCYKNGLCSCRDYW 722
>AT5G46460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:18840305-18842398 FORWARD
Length = 697
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ T + + ++KNLRVC DCH V K+IS + REI++RD +RFH F N
Sbjct: 629 HSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKN 688
Query: 61 GTCSCKDYW 69
GTCSC DYW
Sbjct: 689 GTCSCGDYW 697
>AT4G14850.1 | Symbols: LOI1 | LOI1 (lovastatin insensitive 1) |
chr4:8513947-8516275 FORWARD
Length = 684
Score = 97.4 bits (241), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GL+ IRI KNLR+CGDCH K +S REIIVRD RFH+F +
Sbjct: 616 HSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKD 675
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 676 GICSCKDYW 684
>AT3G46790.1 | Symbols: CRR2 | CRR2 (CHLORORESPIRATORY REDUCTION 2)
| chr3:17231975-17233948 REVERSE
Length = 657
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GL+ T IRI KNLR+C DCH TK ISK ++EI+VRD RFH+F N
Sbjct: 589 HSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKN 648
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 649 GVCSCGDYW 657
>AT3G23330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8347200-8349347 FORWARD
Length = 679
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+A+G++ T+ TIR+ KN+R+C DCH K ISKI +REIIVRD RFH F
Sbjct: 611 HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNR 670
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 671 GNCSCGDYW 679
>AT4G16835.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:9473021-9474803 FORWARD
Length = 575
Score = 97.1 bits (240), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+G +K + I++ KNLR+CGDCH+ K IS+I REIIVRD RFH F +
Sbjct: 507 HSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKD 566
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 567 GSCSCGDYW 575
>AT3G49710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:18437845-18440010 FORWARD
Length = 721
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GLM T+ + +VKNLR+CGDCH K +S + REIIVRD +RFH F +
Sbjct: 653 HSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKD 712
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 713 GKCSCGDYW 721
>AT2G27610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:11783927-11786533 REVERSE
Length = 868
Score = 96.3 bits (238), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKF-V 59
HSERLAIA+GL+ T + + I+KNLRVCGDCH V K+I+KI +REI+VRD RFH F
Sbjct: 799 HSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858
Query: 60 NGTCSCKDYW 69
+G CSC D+W
Sbjct: 859 DGVCSCGDFW 868
>AT3G12770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4056900-4059193 REVERSE
Length = 719
Score = 96.3 bits (238), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/68 (61%), Positives = 50/68 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSER+AIAYGL+ T +RI KNLR C +CH TK+ISK+ DREI+VRD RFH F +
Sbjct: 626 HSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKD 685
Query: 61 GTCSCKDY 68
G CSC DY
Sbjct: 686 GVCSCGDY 693
>AT1G25360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8894428-8896800 FORWARD
Length = 790
Score = 95.9 bits (237), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++A+A+GLMK TIRI KNLR CGDCH + +S + R+II+RDR RFH F N
Sbjct: 722 HSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRN 781
Query: 61 GTCSCKDYW 69
G CSC ++W
Sbjct: 782 GECSCGNFW 790
>AT3G22690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8020757-8024534 REVERSE
Length = 978
Score = 95.5 bits (236), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 49/68 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+AYGL+ + TIRIVKNLRVC DCH K SK+Y+REII+RD RFH
Sbjct: 774 HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQ 833
Query: 61 GTCSCKDY 68
G CSC D+
Sbjct: 834 GKCSCGDF 841
>AT4G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:1221116-1223461 REVERSE
Length = 781
Score = 95.5 bits (236), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+AYG+M+ + IR++KNLRVC DCH K +++I R II+RD RFH F +
Sbjct: 713 HSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKD 772
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 773 GSCSCGDYW 781
>AT1G04840.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:1362867-1364962 REVERSE
Length = 665
Score = 95.5 bits (236), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ G ++T TIRI+KNLR+CGDCH + K +SKI R+I++RD +FH F +
Sbjct: 597 HSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKD 656
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 657 GRCSCGDYW 665
>AT2G41080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:17132857-17134554 FORWARD
Length = 565
Score = 95.5 bits (236), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+ LM A IRI+KNLRVC DCH K IS I +REI +RD RFH F+N
Sbjct: 497 HSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFIN 556
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 557 GKCSCGDYW 565
>AT5G52630.1 | Symbols: MEF1 | MEF1 (MITOCHONDRIAL RNA EDITING
FACTOR 1) | chr5:21350375-21352141 FORWARD
Length = 588
Score = 95.1 bits (235), Expect = 8e-21, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+GL+ A IR++KNLRVCGDCH K +S R IIVRD RFH+F +
Sbjct: 520 HSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFED 579
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 580 GKCSCNDYW 588
>AT3G11460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:3608250-3610121 FORWARD
Length = 623
Score = 95.1 bits (235), Expect = 8e-21, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 50/69 (72%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLAIA+G++ + I ++KNLRVC DCH K +SKI DR+ +VRD RFH F +
Sbjct: 555 HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKD 614
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 615 GVCSCKDYW 623
>AT5G39680.1 | Symbols: EMB2744 | EMB2744 (EMBRYO DEFECTIVE 2744) |
chr5:15884236-15886368 REVERSE
Length = 710
Score = 94.7 bits (234), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+AYGL+KT + + + KN+R+C DCH K+ISKI R I++RD RFH F++
Sbjct: 642 HSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLD 701
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 702 GQCSCCDYW 710
>AT5G50990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: F mature embryo stage,
petal differentiation and expansion stage, D bilateral
stage, E expanded cotyledon stage; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: binding
(TAIR:AT3G62890.1); Has 13116 Blast hits to 4886
proteins in 160 species: Archae - 0; Bacteria - 0;
Metazoa - 67; Fungi - 72; Plants - 12769; Viruses - 0;
Other Eukaryotes - 208 (source: NCBI BLink). |
chr5:20739453-20741281 FORWARD
Length = 534
Score = 94.4 bits (233), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+AY ++K+ IRI KN+R+C DCH K +SK+ +R II+RDR+RFH+F +
Sbjct: 466 HSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFED 525
Query: 61 GTCSCKDYW 69
G CSC+DYW
Sbjct: 526 GLCSCRDYW 534
>AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo defective 2261) |
chr3:18226954-18229600 REVERSE
Length = 850
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++A+A+GL+ T +R+ KNLRVCGDCH K IS + REI++RD RFH F +
Sbjct: 782 HSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKD 841
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 842 GKCSCNDYW 850
>AT3G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4519647-4521533 FORWARD
Length = 628
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ +GL+ T IR+ KNLR+C DCH KI SK+++RE+ +RD+ RFH+ V+
Sbjct: 560 HSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVD 619
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 620 GICSCGDYW 628
>AT2G33760.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14275800-14277551 FORWARD
Length = 583
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GL+KT I IVKNLR+C DCH K IS + +R+I VRD++RFH F N
Sbjct: 516 HSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQN 574
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 575 GSCSCLDYW 583
>AT2G02980.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:868468-870279 FORWARD
Length = 603
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAI +GL+ T TIR+VKNLRVC DCH K+IS I+ R++++RD RFH F +
Sbjct: 535 HSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 595 GKCSCGDFW 603
>AT2G01510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:230752-232506 REVERSE
Length = 584
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+GL+K + IR++KNLR C DCH +K +S + EII+RD+ RFH F N
Sbjct: 516 HSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575
Query: 61 GTCSCKDYW 69
G CSCK++W
Sbjct: 576 GVCSCKEFW 584
>AT3G02010.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:337965-340442 FORWARD
Length = 825
Score = 92.4 bits (228), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 46/69 (66%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA+A+ L+ T I ++KNLR C DCH K+ISKI REI VRD RFH F
Sbjct: 757 HSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSE 816
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 817 GVCSCGDYW 825
>AT1G20230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:7009570-7011852 FORWARD
Length = 760
Score = 91.7 bits (226), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ +GL+ T ++++KNLR+CGDCH V K IS REI +RD RFH F +
Sbjct: 692 HSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKD 751
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 752 GICSCGDFW 760
>AT5G13270.1 | Symbols: RARE1 | pentatricopeptide (PPR)
repeat-containing protein | chr5:4246954-4249212 REVERSE
Length = 752
Score = 90.9 bits (224), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 1 HSERLAIAYGLMKT--KAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKF 58
HSERLAIA+GL+ APA I++ KNLR C DCHE K +S + EI++RD RFH F
Sbjct: 682 HSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHF 741
Query: 59 VNGTCSCKDYW 69
G CSC DYW
Sbjct: 742 KEGKCSCNDYW 752
>AT3G14330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4779688-4782451 REVERSE
Length = 710
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 48/69 (69%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSERLA Y L+ T IRI KNLRVC DCH KI+S++ R I++RD RFH FV+
Sbjct: 642 HSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVD 701
Query: 61 GTCSCKDYW 69
G CSCKDYW
Sbjct: 702 GICSCKDYW 710
>AT2G03880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:1181560-1183452 FORWARD
Length = 630
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+GLM IRI KNLR+CGDCH K+ SK+ R I++RD +R+H F +
Sbjct: 562 HSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQD 621
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 622 GKCSCGDYW 630
>AT5G09950.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3102877-3105864 REVERSE
Length = 995
Score = 89.7 bits (221), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 1 HSERLAIAYGLMKTKAPA-TIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFV 59
HSE+LA+A+ L ++ IRI+KNLRVCGDCH K ISKI R+II+RD RFH F
Sbjct: 926 HSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQ 985
Query: 60 NGTCSCKDYW 69
+G CSC D+W
Sbjct: 986 DGACSCSDFW 995
>AT4G18750.1 | Symbols: DOT4 | DOT4 (DEFECTIVELY ORGANIZED
TRIBUTARIES 4) | chr4:10304850-10307465 FORWARD
Length = 871
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A G++ + IR+ KNLRVCGDCHE+ K +SK+ REI++RD RFH+F +
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Query: 61 GTCSCKDYW 69
G CSC+ +W
Sbjct: 863 GHCSCRGFW 871
>AT5G40410.1 | Symbols: | INVOLVED IN: biological_process unknown;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT1G08070.1); Has 12213 Blast hits to 4641
proteins in 127 species: Archae - 0; Bacteria - 0;
Metazoa - 61; Fungi - 12; Plants - 12006; Viruses - 0;
Other Eukaryotes - 134 (source: NCBI BLink). |
chr5:16171385-16173211 FORWARD
Length = 608
Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++A+A+GL+ I I KNLR+CGDCHE K IS I R II+RD RFH F++
Sbjct: 540 HSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLD 599
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 600 GSCSCSDYW 608
>AT1G74630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28030521-28032452 FORWARD
Length = 643
Score = 88.6 bits (218), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 53/69 (76%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+ L + A IRIVKNLR+C DCH V K+ SK+Y EI+VRDR RFH F +
Sbjct: 575 HSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKD 634
Query: 61 GTCSCKDYW 69
G+CSC+DYW
Sbjct: 635 GSCSCRDYW 643
>AT5G65570.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26203968-26206184 FORWARD
Length = 738
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIA+ + + +IRI+KNLRVC DCH KI+S++ REII RD RFH F +
Sbjct: 671 HSEKLAIAFAVWRNVG-GSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRD 729
Query: 61 GTCSCKDYW 69
G+CSC DYW
Sbjct: 730 GSCSCGDYW 738
>AT5G13230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4222514-4224982 FORWARD
Length = 822
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 1 HSERLAIAYGLMKTKAPAT-IRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFV 59
HSERLA+AYGL++ + I I+KNLR+C DCH K+IS I R++++RD RFH F
Sbjct: 753 HSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFH 812
Query: 60 NGTCSCKDYW 69
G CSC D+W
Sbjct: 813 AGVCSCGDHW 822
>AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: EMB2758
(embryo defective 2758) (TAIR:AT4G33990.1); Has 45368
Blast hits to 16108 proteins in 635 species: Archae -
60; Bacteria - 10333; Metazoa - 8211; Fungi - 3499;
Plants - 14806; Viruses - 492; Other Eukaryotes - 7967
(source: NCBI BLink). | chr3:18212187-18217848 REVERSE
Length = 1215
Score = 86.7 bits (213), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 1 HSERLAIAYGLMKTK-----APATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRF 55
HSE+LAI + LM TK + TIRI KNLR+CGDCH K+IS+I REII+RD RF
Sbjct: 613 HSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRF 672
Query: 56 HKFVNGTCSC 65
H F G CSC
Sbjct: 673 HVFRFGVCSC 682
>AT4G32450.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15661092-15662705 FORWARD
Length = 537
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
H+ER A + T A + IR++KNLRVC DCH K++SKI RE+I RD RFH +
Sbjct: 469 HNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKD 528
Query: 61 GTCSCKDYW 69
G CSC++YW
Sbjct: 529 GVCSCREYW 537
>AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: EMB2758
(embryo defective 2758) (TAIR:AT4G33990.1). |
chr3:18213981-18217848 REVERSE
Length = 896
Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 1 HSERLAIAYGLMKTK-----APATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRF 55
HSE+LAI + LM TK + TIRI KNLR+CGDCH K+IS+I REII+RD RF
Sbjct: 613 HSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRF 672
Query: 56 HKFVNGTCSC 65
H F G CSC
Sbjct: 673 HVFRFGVCSC 682
>AT2G25580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G32450.1); Has 7881 Blast hits to 3723
proteins in 97 species: Archae - 0; Bacteria - 6;
Metazoa - 6; Fungi - 16; Plants - 7829; Viruses - 0;
Other Eukaryotes - 24 (source: NCBI BLink). |
chr2:10888102-10889949 FORWARD
Length = 615
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSER+A A ++ + ++KNLRVC DCH KI+S I RE+I RD RFH+ N
Sbjct: 547 HSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKN 606
Query: 61 GTCSCKDYW 69
G C+CKDYW
Sbjct: 607 GACTCKDYW 615
>AT4G37170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:17498580-17500655 REVERSE
Length = 691
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+A+ ++ T+ I++ KNLR C DCH K IS I R+I VRD RFH F N
Sbjct: 623 HSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFEN 682
Query: 61 GTCSCKDYW 69
G CSC DYW
Sbjct: 683 GQCSCGDYW 691
>AT5G44230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:17814336-17816309 FORWARD
Length = 657
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 51/69 (73%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
H+E+LA+A+ L+ T +TI I+KNLR+C DCH+ ++ S++ + II+RD +RFH F +
Sbjct: 589 HTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRS 648
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 649 GDCSCGDFW 657
>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | EMB175 (EMBRYO
DEFECTIVE 175); catalytic | chr5:1010894-1013584 REVERSE
Length = 896
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 1 HSERLAIAYGLMKTKAPAT-IRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFV 59
HS +LA+ YG++ + +R++KN+ +CGDCHE K IS + REI++RD FH FV
Sbjct: 827 HSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFV 886
Query: 60 NGTCSCKDYW 69
NG CSC+D W
Sbjct: 887 NGKCSCRDLW 896
>AT1G19720.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6819926-6822610 REVERSE
Length = 894
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 1 HSERLAIAYGLMKTKAPA--TIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKF 58
HSE+ A+A+GL+ + + TIRI+KNLR+C DCH+ K +SK Y +I++ D H F
Sbjct: 824 HSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHF 883
Query: 59 VNGTCSCKDYW 69
NG CSCKDYW
Sbjct: 884 KNGDCSCKDYW 894
>AT5G04780.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: MEF1
(MITOCHONDRIAL RNA EDITING FACTOR 1) (TAIR:AT5G52630.1);
Has 13798 Blast hits to 4918 proteins in 150 species:
Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 36;
Plants - 13447; Viruses - 0; Other Eukaryotes - 252
(source: NCBI BLink). | chr5:1384564-1386447 FORWARD
Length = 627
Score = 82.0 bits (201), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 46/69 (66%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LA+ +GLM + +RI+KNLR+C DCHE K S R IIVRD RFH F +
Sbjct: 559 HSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSD 618
Query: 61 GTCSCKDYW 69
G CSC D+W
Sbjct: 619 GHCSCGDFW 627
>AT5G50390.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:20520789-20522980 REVERSE
Length = 701
Score = 82.0 bits (201), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE+LAIAYGL+ T ++I +N R+C +CH+V + IS + RE++VRD RFH F
Sbjct: 633 HSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKE 692
Query: 61 GTCSCKDYW 69
G CSC YW
Sbjct: 693 GKCSCGGYW 701
>AT3G15130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5097153-5099222 REVERSE
Length = 689
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 HSERLAIAYGLMK---TKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHK 57
HSE+LAI L + TIR+ KNLRVC DCHE K +SKI +VRD VRFH
Sbjct: 618 HSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHS 677
Query: 58 FVNGTCSCKDYW 69
F +G CSC DYW
Sbjct: 678 FEDGCCSCGDYW 689
>AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:448336-449838 REVERSE
Length = 500
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
H+E+LA+ YGL+K K A IR+VKN +C D H V K +S + +REI++++ R H F +
Sbjct: 432 HTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRD 491
Query: 61 GTCSCKDYW 69
G CSC D W
Sbjct: 492 GKCSCNDSW 500
>AT1G71420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26917822-26920059 REVERSE
Length = 745
Score = 78.2 bits (191), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 1 HSERLAIAYGLMKTKAPAT-----IRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRF 55
HSE+LA+A+ +M+ + + I+I+KN R+C DCH K+ SK+ +EI++RD RF
Sbjct: 672 HSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRF 731
Query: 56 HKFVNGTCSCKDYW 69
H F + +CSC DYW
Sbjct: 732 HHFKDSSCSCNDYW 745
>AT3G24000.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: shoot apex, carpel; EXPRESSED DURING:
petal differentiation and expansion stage; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT3G23330.1); Has 15874 Blast hits to 5333
proteins in 187 species: Archae - 1; Bacteria - 6;
Metazoa - 100; Fungi - 81; Plants - 15349; Viruses - 0;
Other Eukaryotes - 337 (source: NCBI BLink). |
chr3:8672774-8674881 FORWARD
Length = 665
Score = 75.9 bits (185), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSE++A+A+ L+ T +TI I KN+RVCGDCH K+ SK+ REIIVRD RFH F +
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624
Query: 61 GT 62
+
Sbjct: 625 AS 626
>AT1G15510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:5329111-5331711 FORWARD
Length = 866
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 42/67 (62%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HSER AIA+GL+ T I + KNL +C +CH+ K ISK REI VRD FH F +
Sbjct: 800 HSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKD 859
Query: 61 GTCSCKD 67
G CSC D
Sbjct: 860 GECSCGD 866
>AT5G52850.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:21414935-21417616 REVERSE
Length = 893
Score = 68.6 bits (166), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HS + A+ YG + A + +VKN +C DCHE I++++ D++I VRD + H F N
Sbjct: 821 HSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKN 880
Query: 61 GTCSCK 66
G CSCK
Sbjct: 881 GECSCK 886
>AT2G34370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14510482-14511891 FORWARD
Length = 469
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 2 SERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNG 61
S +LA A+ ++ ++A + +++N+R C D H K+IS I R +I RD+ ++H + NG
Sbjct: 402 SNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNG 461
Query: 62 TCSCKDYW 69
CSCKDYW
Sbjct: 462 VCSCKDYW 469
>AT4G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:16721084-16723498 REVERSE
Length = 804
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
HS RLA +GL+ T+ + + N R+C CHE + S++ REI+V D FH F N
Sbjct: 736 HSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSN 795
Query: 61 GTCSCKDYW 69
G CSC +YW
Sbjct: 796 GRCSCGNYW 804
>AT1G29710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:10387673-10389100 FORWARD
Length = 475
Score = 65.5 bits (158), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
+ E +A+ L+K+K + I ++ N+R+ GDCH++ K++S I R++I RD +H F N
Sbjct: 407 YREEIAVVESLLKSKPRSAITLLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKN 466
Query: 61 GTCSCKDYW 69
G C C + W
Sbjct: 467 GVCRCNNLW 475
>AT3G61170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:22638691-22641237 REVERSE
Length = 783
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 1 HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKII 39
HSE+LA+A+GL+ + A IRI+KNLRVCGDCH K++
Sbjct: 699 HSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737