Jatropha Genome Database

JcCA0280621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280621.10 + phase: 0 /pseudo/partial
         (238 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62810.1 | Symbols: PEX14, ATPEX14, PED2 | PEX14; protein bin...    91   7e-19

>AT5G62810.1 | Symbols: PEX14, ATPEX14, PED2 | PEX14; protein
           binding / protein transporter | chr5:25220323-25223571
           FORWARD
          Length = 507

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 3/91 (3%)

Query: 122 KVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNG-KADSDLRSVRS 180
           +V+EMKS+S  I KLEGQ+NN+ +   ADQE Y  SV    ++ Y NG   D D RS RS
Sbjct: 252 QVQEMKSLSNNIRKLEGQSNNIPKIYSADQEVYNGSVTTA-RKPYTNGSNVDYDTRSARS 310

Query: 181 SSPPTS-AEPSVAPHPKSYMEIMAMVQRGER 210
           +SPP + A+ S  PHPKSYM+IM+M+QRGE+
Sbjct: 311 ASPPAAPADSSAPPHPKSYMDIMSMIQRGEK 341