Jatropha Genome Database

JcCA0279201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279201.10 - phase: 0 /partial
         (235 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60740.1 | Symbols: TTN1, EMB133, TFC D, CHO | TTN1 (TITAN 1)...   305   2e-83

>AT3G60740.1 | Symbols: TTN1, EMB133, TFC D, CHO | TTN1 (TITAN 1);
           tubulin binding | chr3:22447385-22453325 REVERSE
          Length = 1254

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 185/226 (81%)

Query: 10  HGCKERVLQKYFLQEWKLVKSLLDDIVSNGRVSDLSSVHKIRSIMDKYQQEGQLLEPYLE 69
           H  KERVLQ+YFLQEWKLVKSLLDDIVSNGRV D +SVHKIRSIMDKYQ++GQL+EPYLE
Sbjct: 29  HDSKERVLQRYFLQEWKLVKSLLDDIVSNGRVVDPTSVHKIRSIMDKYQEQGQLVEPYLE 88

Query: 70  SIVSPLMSIIRTKTIELGIASDEILQVIKPICIIIYCLVTVGGYKAVIKFFPHQVSNLEL 129
           SIVSPLM IIR+KT++L    DEIL++IKPI IIIY LVTV GYKAVIKFFPHQVS+LEL
Sbjct: 89  SIVSPLMFIIRSKTVDLEAKPDEILEIIKPISIIIYALVTVCGYKAVIKFFPHQVSDLEL 148

Query: 130 AVALLDKCHDTASGTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTSIANNNDICK 189
           AV LL+KCH T S ++LRQESTGEMEAKC            PFDISSVDTSIA++     
Sbjct: 149 AVLLLEKCHSTNSVSALRQESTGEMEAKCVTLLWLSILVLVPFDISSVDTSIADDKTFGV 208

Query: 190 LEPSPLVLRIMKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPMAFT 235
            + +PLVL+I+ F KDYL +AGPMR ++GLLLSKLLTRPDM  AF+
Sbjct: 209 DDLAPLVLKILGFCKDYLCSAGPMRRISGLLLSKLLTRPDMGKAFS 254