Jatropha Genome Database

JcCA0279081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279081.10 - phase: 0 
         (299 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36220.1 | Symbols:  | unknown protein | chr2:15192556-151933...   153   1e-37
AT3G52710.1 | Symbols:  | unknown protein | chr3:19534638-195355...   147   6e-36

>AT2G36220.1 | Symbols:  | unknown protein | chr2:15192556-15193347
           FORWARD
          Length = 263

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 152/297 (51%), Gaps = 45/297 (15%)

Query: 1   MPQVDLETLVSA-CAGVSCDRKIACETLATTTTASDNHNQQ---PQDSETXXXXXXXXXX 56
           MPQVD+E  VS+ C G S  RKI CETLA  +T    +N     P D             
Sbjct: 1   MPQVDIEAFVSSVCIGGSDHRKIVCETLADDSTIPPYYNNSAVSPSD-----------FP 49

Query: 57  XXSFWLSKDAEYDWFDRNAFIERKDSTKGNNSHSANLNPNIIPHSGIQSNSQRFSNLKSK 116
             S++LS DA+ +W   NAF +RKDS KGN+         +  +     +SQRF  LKSK
Sbjct: 50  PESYFLSNDAQLEWLSDNAFFDRKDSQKGNSGI-------LNSNPNSNPSSQRFL-LKSK 101

Query: 117 ASILGLPKPQKSCFVEARRYCKPGKTRLFPKRXXXXXXXXXXLIEPSSPKVSCMXXXXXX 176
           ASI+GLPKPQK+CF EA++    GK R+  KR          L+EPSSPKVSC+      
Sbjct: 102 ASIIGLPKPQKTCFNEAKQRRHAGKNRVILKRVGSRIKTDISLLEPSSPKVSCI------ 155

Query: 177 XXXXXXXXXXXXXXXXXETDNKREKVERKQRTGFFSTFRAIFRVTKHNTRNRKDGSLSRQ 236
                            +  ++ E V R ++ GF ++FRAIFR+        KD S +R+
Sbjct: 156 --GRVRSRRERSRRMHRQKSSRVEPVNRVKKPGFMASFRAIFRIKG----GCKDVS-ARE 208

Query: 237 GSTAKTTITDIRDRLPAGERDSQPRKSVDSDGFEPAAGTEPVGLGAMKRFASGRKSD 293
             T+     DIR RLPA E D    KSV  DG EP       GLG M RFASGR++D
Sbjct: 209 THTSTRNTHDIRSRLPA-EAD---EKSV-FDGGEPVV----PGLGGMTRFASGRRAD 256


>AT3G52710.1 | Symbols:  | unknown protein | chr3:19534638-19535507
           FORWARD
          Length = 289

 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 157/314 (50%), Gaps = 41/314 (13%)

Query: 1   MPQVDLETLVSACAGVSCDRKIACETLATTTTASDNHNQQPQDSETXXXXXXXXX-XXXS 59
           MPQV    + SAC G S DRKI+CETLA      D++   P +S+              S
Sbjct: 1   MPQV----VASACTGGS-DRKISCETLA------DDNEDSPHNSKIRPVSISAVDFPPES 49

Query: 60  FWLSKDAEYDWFDRNAFIERKDSTKGNNSHSANLNPNIIPHSGIQSNSQRFSNLKSKASI 119
           + LSK+A+ +W + NAF ERK+S KGN+S   + NPN  P+    S+S R S LKSKASI
Sbjct: 50  YSLSKEAQLEWLNDNAFFERKESQKGNSSAPIS-NPNTNPN----SSSHRIS-LKSKASI 103

Query: 120 LGLPKPQKSCFVEA--RRYCKPGKTRLFPKRXXXXXXXXXXLIEPSSPKVSCMXXXXXXX 177
           + LPKPQK+CF EA  RR C+  +T + PKR          L EP SPKVSC+       
Sbjct: 104 IRLPKPQKTCFNEAKKRRNCRIARTLMIPKRIGSRLKSDPTLSEPCSPKVSCI----GRV 159

Query: 178 XXXXXXXXXXXXXXXXETDNKREKVERKQRTGFFSTFRAIFR-------VTKHNTRNRKD 230
                            T++ ++K    ++ GFF++FRAIFR       ++       + 
Sbjct: 160 RSKRDRSRRMQRQKSGRTNSFKDKPVPVKKPGFFASFRAIFRTGGGCKDLSASGAHAPRR 219

Query: 231 GSLSRQGSTAKTTITDIRDRLPAGE--RDSQPRKSVDS----DGFEPAAGTEPVGLGAMK 284
             +      +    TDIR RLP G+  + S  R S  S    DG EP       GLG M 
Sbjct: 220 DVVVSPPRVSVRRSTDIRGRLPPGDVGKSSPQRNSTGSRRSIDGGEPVL----PGLGGMT 275

Query: 285 RFASGRKSDSWVDV 298
           RF SGR+ D  V+V
Sbjct: 276 RFTSGRRPDLLVEV 289