Jatropha Genome Database
- JcCA0278741.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0278741.10 - phase: 0 /pseudo
(313 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12870.1 | Symbols: | S locus F-box-related / SLF-related | ... 55 7e-08
AT3G21130.1 | Symbols: | F-box family protein | chr3:7408246-74... 53 3e-07
AT3G61340.1 | Symbols: | F-box family protein | chr3:22701215-2... 52 4e-07
AT3G21170.1 | Symbols: | F-box family protein | chr3:7419976-74... 51 8e-07
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 51 1e-06
AT2G41473.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 1e-06
AT1G11620.1 | Symbols: | F-box family protein | chr1:3910833-39... 51 1e-06
AT3G21120.1 | Symbols: | F-box family protein | chr3:7406326-74... 50 2e-06
AT4G10190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-lik... 48 7e-06
AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483... 48 7e-06
>AT1G12870.1 | Symbols: | S locus F-box-related / SLF-related |
chr1:4387129-4389110 REVERSE
Length = 416
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 55/320 (17%)
Query: 14 IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFA--------RSHVNHNRINAPHQ 65
+ DD++ +I LKLP+K++ RF+S SK+W+S + F+ RSHV+H ++
Sbjct: 33 LPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKV----- 87
Query: 66 NSLIFRHLTMLNSESLEKVVKQNDKTVDVDSNDL---RIYKFSIPSKDRLNVSCCCDGIL 122
M+ +E ++ + +T+ ++S ++ F + S CDGI
Sbjct: 88 ---------MIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASESCDGIF 138
Query: 123 C-ATISIMRILLWTPLVEDYKI*RVPVLRLI-----LSCTMY*VLGMIRL--LMITKLCM 174
C + I + P ++ ++P R L+ T+ + MI + L K
Sbjct: 139 CIHSPKTQDIYVVNPATRWFR--QLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATD 196
Query: 175 FHPLQLILEDVRRLVF*L*GPTRGDKFMMTSN---FLRMIPQKQFL*ME---VCTGLLFD 228
+ + L D R+ T+ + F +N +L IP + + G L+
Sbjct: 197 YKLVWLYNSDASRV-------TKCEVFDFKANAWRYLTCIPSYRIYHDQKPASANGTLYW 249
Query: 229 STDSRRNTI--IGFNLATEVFWEVLLPPSVTPSKGP--LQLRPLNSCLSLSNNEEDDSFL 284
T++ I I ++ TE+F +L PS+ S P + + +++ L + E D +
Sbjct: 250 FTETYNAEIKVIALDIHTEIF-RLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDKKII 308
Query: 285 -EVWVLKDKKQSAWSKFITI 303
E+W LK + AW K TI
Sbjct: 309 QEIWRLKS-SEDAWEKIYTI 327
>AT3G21130.1 | Symbols: | F-box family protein |
chr3:7408246-7409349 FORWARD
Length = 367
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 25/135 (18%)
Query: 14 IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQN---SLIF 70
+++DLIV+IL ++ S+AR R+TSKRW +++ D R A+ H + AP Q+ +LI
Sbjct: 10 LSEDLIVEILSRVSAVSLARLRTTSKRWNALVKDERLAKKHSAY----APRQSLVITLID 65
Query: 71 RHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSC---------CCDGI 121
+ ++N SL+ +++ D + + +FS+ KD L+ S CDG+
Sbjct: 66 SRVYLMNV-SLQYGIEKVDLSAKLTG------QFSL--KDPLSNSLEEVDIRNVFHCDGL 116
Query: 122 LCATISIMRILLWTP 136
L + R+++W P
Sbjct: 117 LLCSTKDNRLVVWNP 131
>AT3G61340.1 | Symbols: | F-box family protein |
chr3:22701215-22702447 REVERSE
Length = 410
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 6 KKENPDKEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHV 55
K+E + I DL+++ILL+LP+KS+ARFR SK WQS + F S++
Sbjct: 15 KEEEKSERIPFDLVIEILLRLPVKSIARFRYVSKLWQSTLRGQHFTESYL 64
>AT3G21170.1 | Symbols: | F-box family protein |
chr3:7419976-7421160 FORWARD
Length = 394
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 44/147 (29%)
Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
++ +DL+V+IL ++P +AR RSTSKRW ++I D + ++ H + NAP RH
Sbjct: 5 DLPEDLVVEILSRVPAVFLARLRSTSKRWNTLIKDGKLSKKHSS----NAP-------RH 53
Query: 73 LTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSC---------------- 116
L V + K V SN I+ P +N++C
Sbjct: 54 SMAL--------VLIDHKVYSVRSNLRGIHNSVAP---YVNITCHFSLKEHLSNNYSTEV 102
Query: 117 ------CCDGILCATISIMRILLWTPL 137
CDG+L T R+++W PL
Sbjct: 103 DIGHVFHCDGLLLCTTKDYRLVVWNPL 129
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE
Length = 360
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 24/137 (17%)
Query: 12 KEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQN-SLIF 70
K + ++L ++IL++L +K +ARFR K W+ +I+D F ++ R +P + S
Sbjct: 3 KFLPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETY----RDMSPAKFVSFYD 58
Query: 71 RHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIP-SKDRLNVSCC---CDGILCATI 126
++ ML+ E V+ K P + ++ S C CDG LC T+
Sbjct: 59 KNFYMLDVEGKHPVITN---------------KLDFPLDQSMIDESTCVLHCDGTLCVTL 103
Query: 127 SIMRILLWTPLVEDYKI 143
+++W P + +KI
Sbjct: 104 KNHTLMVWNPFSKQFKI 120
>AT2G41473.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; CONTAINS
InterPro DOMAIN/s: Cyclin-like F-box
(InterPro:IPR001810); BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT3G17710.1). |
chr2:17294453-17294728 REVERSE
Length = 91
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNH 57
E+A DL+++IL K+P+K + RFR K W+S+ D RF R H H
Sbjct: 3 ELAFDLVIEILAKVPVKYLLRFRCVCKSWRSLFQDERFIRMHTTH 47
>AT1G11620.1 | Symbols: | F-box family protein |
chr1:3910833-3911924 FORWARD
Length = 363
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
+++ DL+ +IL ++P +S+ R RST K+W+++I++ RF H++H R +
Sbjct: 5 DLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYRE--------QQ 56
Query: 73 LTMLNSESL-EKVVKQNDKTVDVDSN-----DLRIYKFSIPSKDRLNVSCCCDGILCATI 126
T+ N+E + + V +D N +++ F I +N+S CDG+L
Sbjct: 57 FTVFNNEHIVSPLFGSTTSYVGIDFNKPENCGVKL-PFPIALSPAINIS-HCDGLLLYVT 114
Query: 127 SIMRILLWTPLV 138
M +L+ PL+
Sbjct: 115 KSM-LLVANPLL 125
>AT3G21120.1 | Symbols: | F-box family protein |
chr3:7406326-7407429 FORWARD
Length = 367
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLI-FR 71
+ +DL+++IL K+P S+ARFRST +RW +++ D FA+ H + P LI FR
Sbjct: 2 HLPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGSFAKKHYAYGPRQYPIVIMLIEFR 61
Query: 72 HLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNV--SCCCDGILCATISIM 129
L S L + N + + S + +++ + CDG+L
Sbjct: 62 --VYLVSIDLHGINNNNGAPSAKLTGQFSLKDPLSNSSEEVDIRNAFHCDGLLLCCTKDR 119
Query: 130 RILLWTPLVEDYK 142
R+++W P + K
Sbjct: 120 RLVVWNPCSGETK 132
>AT4G10190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-like
F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT3G21130.1); Has
950 Blast hits to 926 proteins in 40 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 948;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr4:6350928-6352031 FORWARD
Length = 367
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
++ +DL+++IL ++P ++ R +STSKRW +I D RFA H NAP + LI
Sbjct: 8 DLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRFAEQHFT----NAPRHSLLIMLM 63
Query: 73 LTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRL-NVSCC----CDGILCATIS 127
+ S++ N+K N + + P + L V C CDG L T
Sbjct: 64 TFRVYLVSVDLHTIHNNKV-----NIISQLRLKDPLSNFLEEVDICNVFHCDGFLLCTTV 118
Query: 128 IMRILLWTPLVEDYK 142
R+++ P D K
Sbjct: 119 DNRLVVSNPCSRDTK 133
>AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483829
FORWARD
Length = 334
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 41/181 (22%)
Query: 6 KKENPDKEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQ 65
+KE I ++++ +IL++LP+KS+ RF++ SK W+++I+ F + H+ +
Sbjct: 31 RKEFEKIHIPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKG--- 87
Query: 66 NSLIF---------RHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSC 116
L+F L + +LEK V D + ++F K L++S
Sbjct: 88 CKLLFVCDDFVDRAEDTLFLKTVALEK--------TSVSEGDEQAFEFE-GYKGFLDISE 138
Query: 117 CCDGILCATISIMRILLWTPLVEDYKI*RVPVLRLILSCTMY*VLGMIRLLMITKLCMFH 176
CDG++C + + + P + TM+ L + R I +LC++
Sbjct: 139 SCDGLVCFYDTTRAVEVMNP-----------------ATTMFIELPLSR---IQQLCIYK 178
Query: 177 P 177
P
Sbjct: 179 P 179