Jatropha Genome Database

JcCA0278721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278721.10 + phase: 1 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58770.1 | Symbols:  | dehydrodolichyl diphosphate synthase, ...   142   6e-35
AT5G58780.1 | Symbols:  | dehydrodolichyl diphosphate synthase, ...   122   5e-29
AT5G58784.1 | Symbols:  | dehydrodolichyl diphosphate synthase |...   121   9e-29
AT5G58782.1 | Symbols:  | dehydrodolichyl diphosphate synthase, ...   121   1e-28
AT2G23410.1 | Symbols: ACPT | ACPT (Arabidopsis cis-prenyltransf...   118   1e-27
AT2G23400.1 | Symbols:  | dehydrodolichyl diphosphate synthase, ...   112   5e-26
AT2G17570.1 | Symbols:  | undecaprenyl pyrophosphate synthetase ...    59   8e-10
AT5G60500.1 | Symbols:  | undecaprenyl pyrophosphate synthetase ...    49   9e-07
AT5G60510.1 | Symbols:  | undecaprenyl pyrophosphate synthetase ...    48   1e-06

>AT5G58770.1 | Symbols:  | dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative |
           chr5:23734396-23735495 FORWARD
          Length = 310

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           C+ IA RVKDG IE E+I E LIE+ELETNC+EFP PDLLIRTSGELR+SNFLLWQLAYT
Sbjct: 215 CRGIARRVKDGEIEVEEIDERLIEEELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYT 274

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           ELFFA+ELWPDFG+ GF+EAL S
Sbjct: 275 ELFFAQELWPDFGRSGFIEALMS 297


>AT5G58780.1 | Symbols:  | dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative |
           chr5:23735755-23737284 REVERSE
          Length = 302

 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 67/83 (80%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           CKSI  + + GLI  ED+ E+LIE+EL TNC+EFPSPDLLIRTSGE RISNF LWQLAYT
Sbjct: 208 CKSIVKKSEKGLIREEDVDEALIERELLTNCTEFPSPDLLIRTSGEQRISNFFLWQLAYT 267

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           ELFF+  LWPDF K+  +EAL S
Sbjct: 268 ELFFSPVLWPDFDKDKLLEALVS 290


>AT5G58784.1 | Symbols:  | dehydrodolichyl diphosphate synthase |
           chr5:23739950-23741267 REVERSE
          Length = 302

 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 67/82 (81%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           CKS+A +VKDGLI+ EDI E  +E+EL T CSEFP+PDLLIRTSGE RISNF LWQ AYT
Sbjct: 208 CKSLANKVKDGLIQVEDINEKAMEKELLTKCSEFPNPDLLIRTSGEQRISNFFLWQSAYT 267

Query: 61  ELFFAEELWPDFGKEGFVEALT 82
           EL+F   LWPDFG+  ++EALT
Sbjct: 268 ELYFPTVLWPDFGEAEYLEALT 289


>AT5G58782.1 | Symbols:  | dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative |
           chr5:23738306-23739430 REVERSE
          Length = 289

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 66/83 (79%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           CK+I  + + GLI  ED+ E+L E+EL+T C+EFPSPDLLIRTSGE RISNF LWQLAYT
Sbjct: 195 CKNIVKKSEQGLIREEDVDETLFERELQTRCTEFPSPDLLIRTSGEQRISNFFLWQLAYT 254

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           E FF+  LWPDF K+ F+EAL S
Sbjct: 255 EFFFSPVLWPDFDKQKFIEALVS 277


>AT2G23410.1 | Symbols: ACPT | ACPT (Arabidopsis
           cis-prenyltransferase); dehydrodolichyl diphosphate
           synthase | chr2:9966247-9967741 REVERSE
          Length = 303

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 66/83 (79%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           CKS+  + + GLI  ED+ E+LIE+EL TNCS+FPSPDL+IRTSGE RISNF LWQLAY+
Sbjct: 209 CKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPSPDLMIRTSGEQRISNFFLWQLAYS 268

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           ELFF+   WPDF K+  +EAL S
Sbjct: 269 ELFFSPVFWPDFDKDKLLEALAS 291


>AT2G23400.1 | Symbols:  | dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative |
           chr2:9963978-9965229 REVERSE
          Length = 253

 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query: 3   SIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYTEL 62
            +  + + GLI  ED+ E+LIE+EL TNCS+FPSPDL+IRTSGE RISNF LWQLAYTEL
Sbjct: 161 HLVKKSEKGLIREEDVDEALIERELLTNCSDFPSPDLMIRTSGEQRISNFFLWQLAYTEL 220

Query: 63  FFAEELWPDFGKEGFVEALTS 83
           F++  LWPDF K+  +EAL S
Sbjct: 221 FYSPVLWPDFDKDKLLEALAS 241


>AT2G17570.1 | Symbols:  | undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein |
           chr2:7645086-7645973 FORWARD
          Length = 295

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 13  IEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDF 72
           +E ++    L++ E     S  P+PD+LIR+SGE R+SNFLLWQ   T+L     LWP+ 
Sbjct: 210 MENQEKKIQLVDIEENMQMSVAPNPDILIRSSGETRLSNFLLWQTGNTQLCSPAALWPEI 269

Query: 73  G 73
           G
Sbjct: 270 G 270


>AT5G60500.1 | Symbols:  | undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein |
           chr5:24328815-24329630 FORWARD
          Length = 271

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)

Query: 2   KSIAARVKDG----LIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQL 57
           KS   +  +G    L+E  D+ E +         S  P PDL+IRT G  R+SNF+ WQ 
Sbjct: 178 KSCVRKCTNGDDLVLLELSDVEECMYT-------SIVPVPDLVIRTGGGDRLSNFMTWQT 230

Query: 58  AYTELFFAEELWPDFG 73
           + + L   E LWP+ G
Sbjct: 231 SRSLLHRTEALWPELG 246


>AT5G60510.1 | Symbols:  | undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein |
           chr5:24330721-24331539 FORWARD
          Length = 272

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 32  SEFPSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDFG 73
           S  P PDL++RT G  R+SNF+ WQ +   L   E LWP+ G
Sbjct: 206 SVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELG 247