Jatropha Genome Database

JcCA0278051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278051.10 - phase: 0 /pseudo/partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18390.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    91   2e-19

>AT5G18390.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:6090954-6092333 FORWARD
          Length = 459

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/48 (75%), Positives = 41/48 (85%)

Query: 18  GMCRTGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRAGRYVEAGD 65
           GMCR G FDDAF FF +MKVK HPPNRPVYTMLITMCGR G++V+A +
Sbjct: 366 GMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAAN 413