Jatropha Genome Database

JcCA0277981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277981.20 + phase: 0 /partial
         (192 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25070.1 | Symbols:  | unknown protein | chr5:8641261-8643471...    79   2e-15

>AT5G25070.1 | Symbols:  | unknown protein | chr5:8641261-8643471
           REVERSE
          Length = 736

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 75/144 (52%), Gaps = 39/144 (27%)

Query: 4   DDMDSLFEGMVLFTPSQLVXXXXXXXXXXXXXXXXXNNDSAEISLPPRESESRLDAATAT 63
           DDMDSLFEGM LFTP+                    + DS ++S PP+  E++  AA AT
Sbjct: 5   DDMDSLFEGMELFTPA-----------------SQFSGDS-KVSSPPQSEETK--AAEAT 44

Query: 64  IKTDPP-------------SQHKVQEPLDENLFSDLTLQTLTTESDSLPTAATLQT---- 106
           + T P              SQ  + E LDENLFSDLT+ T   +    P  A + T    
Sbjct: 45  LITAPSQPDVTEATLITATSQPDITEALDENLFSDLTIVT-PVQHQPEPMEAVITTHQSP 103

Query: 107 ATN-SRQISRKKKKAASLRIGYGR 129
           A N  RQ+SR+KK+AA LRIGYGR
Sbjct: 104 AKNYGRQVSRRKKRAAGLRIGYGR 127