Jatropha Genome Database

JcCA0275841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275841.10 + phase: 2 /TE
         (259 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    96   2e-20
AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...    92   3e-19
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    64   8e-11
AT3G25270.1 | Symbols:  | nucleic acid binding | chr3:9203934-92...    59   3e-09
AT2G34320.1 | Symbols:  | nucleic acid binding | chr2:14484959-1...    52   3e-07

>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 114/268 (42%), Gaps = 13/268 (4%)

Query: 1   LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPD-MTNT 59
            W    + +   + D   I +I L  S   D   W+    G YTV+S Y LL  D  TN 
Sbjct: 87  FWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNI 146

Query: 60  PA--PSLQS--FWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLA 115
           PA  P   S     R W L I+ K+K+ +WR  S  L     L  R + +D  CP C   
Sbjct: 147 PAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE 206

Query: 116 EEIPLHVFVDCGYACECLECTVPSVLA-VFDLHAFQRIEDWLQNVFLGMDVEDVQALCIV 174
            E   H    C +A      +  S++      + F+     + N      + D   L  V
Sbjct: 207 NESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPV 266

Query: 175 --LWTIWRHRNEVLWSNTR-TPAPQLLNS---SFSYLLAWQSAQIKTACPVPVVDQGAAV 228
             +W IW+ RN V+++  R +P+  +L++   +  +L A QS + KT  P   + +    
Sbjct: 267 WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHK-KTPSPTRQIAENKIE 325

Query: 229 WSTPPAGYLKCNTDAAPPGVNSQIGAGW 256
           W  PPA Y+KCN DA       +   GW
Sbjct: 326 WRNPPATYVKCNFDAGFDVQKLEATGGW 353


>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 2   WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLL--VPDMTNT 59
           W+ ++++ LF E + KLI ++  G     D + WD    G YTVKS Y +L  + +  ++
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241

Query: 60  P----APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLA 115
           P     PSL   +Q+ W  +   K+++ +W+  SN LPV   L  R +  +  C  C   
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301

Query: 116 EEIPLHVFVDCGYACECLE-CTVPSVLAVFDLHAFQRIEDWLQNVFLGMDV--EDVQALC 172
           +E   H+   C +A       ++P  L      +      W+ N+  G     +  Q + 
Sbjct: 302 KETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVP 361

Query: 173 IVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPV-PVVDQGA-AVWS 230
            +LW +W++RNE+++      A ++L  +   L  W+      +C   P V++ +   W 
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421

Query: 231 TPPAGYLKCNTDAAPPGVNSQIGAGW 256
            PP  ++KCNTDA     N + G GW
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGW 447


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 16/231 (6%)

Query: 40  RGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLI 99
           R  Y V +   LL  +    P P      Q  W L +  K+K+ +WR  +  L   T L 
Sbjct: 7   RSGYWVATHEDLLEEEAIQ-PPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 100 QRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNV 159
            R +D D +C  C + EE   H+  +C Y          +++           ED L  +
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSA--NIIIGNQWGPPSSFEDNLNRL 123

Query: 160 FLGMDVEDVQALCI-----VLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIK 214
                 +   +L       ++W +W+ RN  L+                    W +A   
Sbjct: 124 IQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANET 183

Query: 215 T--------ACPVPVVDQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGAGWS 257
           T          P+    + ++ W+ PP G++KCN D+     +    +GW+
Sbjct: 184 TENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWT 234


>AT3G25270.1 | Symbols:  | nucleic acid binding |
           chr3:9203934-9204965 REVERSE
          Length = 343

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 60  PAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIP 119
           P P       + W LK   K+K+ +W+L S  L     L +R +     C  C   +E  
Sbjct: 7   PPPGKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETS 66

Query: 120 LHVFVDCGYACECLECT-VPSV-LAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWT 177
            H+F DC YA +    + +P   L    +    ++E  L +       +       +LW 
Sbjct: 67  QHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWR 126

Query: 178 IWRHRNEVL-------WSNTRTPAP---QLLNSSFSYLLAWQSAQIKTACPVPVVDQGAA 227
           +W+ RN+++       W NT   A    Q    + +Y+ +       +    P +     
Sbjct: 127 LWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTM--ART 184

Query: 228 VWSTPPAGYLKCNTDAAPPGVNSQIGAGW 256
            W  PP+ ++K N D A         AGW
Sbjct: 185 KWQRPPSTWIKYNYDGAFNHQTRNAKAGW 213


>AT2G34320.1 | Symbols:  | nucleic acid binding |
           chr2:14484959-14485837 FORWARD
          Length = 292

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 174 VLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSA-QIKTACPVPVVDQGAAV-WST 231
           +LW +W+ RNE+++      AP++L  +      W +  +++     P V++  +V W  
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKA 139

Query: 232 PPAGYLKCNTDAAPPGVNSQIGAGW 256
           PP  ++KCNTDA     N + G GW
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGW 164