Jatropha Genome Database

JcCA0275671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275671.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20980.1 | Symbols: MCM10 | MCM10 | chr2:9011654-9013856 REVERSE   286   6e-78

>AT2G20980.1 | Symbols: MCM10 | MCM10 | chr2:9011654-9013856 REVERSE
          Length = 396

 Score =  286 bits (733), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 166/205 (80%), Gaps = 2/205 (0%)

Query: 35  YLSD-ESPRRHGQVDLSVFRDAVQDCLDHDAKPVHKSEKLKQARNSNDVQVEKYSGLRIR 93
           YL+D ESP+R G  DLS FR  VQDC+D++ KP+ K+ K K + NSN   +EK+SGLRIR
Sbjct: 32  YLTDDESPKRRGHSDLSDFRSVVQDCIDYNPKPIAKNTKPKGSNNSNTNDIEKFSGLRIR 91

Query: 94  NQLVTPAELSERLSDIRFVRLPAIKNLLVGDTLSGCWATIGVLTEKGNPRTSSVGKSYCI 153
           NQL++PAE+S+  SDIRFVRLP IKNLL+GD LSGCWAT+GV+TEKG P+TSS+G++Y I
Sbjct: 92  NQLLSPAEISDLFSDIRFVRLPTIKNLLMGDKLSGCWATMGVITEKGQPKTSSIGQAYGI 151

Query: 154 WKIGCLDENTISLFLFGDAYQQNCKEQAGTVFALFNCTVRRDNAG-GFSLSVYSPNQIIK 212
           WKIG L+EN +SLFLFGDAY++N  E+AGTVF LFNC++R+DN G  FSLSV S  Q++K
Sbjct: 152 WKIGSLNENNVSLFLFGDAYKKNETEKAGTVFGLFNCSLRKDNGGREFSLSVNSAKQMVK 211

Query: 213 MGTSIDYGVCKGKRKDGMSCTVIIN 237
           +G S DYGVC  KRKDG +CT ++N
Sbjct: 212 LGVSADYGVCTAKRKDGTTCTSVVN 236